prot_C-linearis_contig10.480.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.480.1
Unique Nameprot_C-linearis_contig10.480.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length434
Homology
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Match: D7G002_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G002_ECTSI)

HSP 1 Score: 474 bits (1219), Expect = 3.370e-163
Identity = 246/377 (65.25%), Postives = 290/377 (76.92%), Query Frame = 0
Query:    1 MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENC--FAEGPAPAIGPDTYQFNLDLEVDIGWRMFTVTLLDLGAAEAG-CFDDLEQGETYPLGDFQDNSASLAGLGMVASWGLGVLVALYTVIALVRARHGYRRGGASIVALSKWCSLFAIGVVTATTVFWWLVEGKFGKRTQALAPRLFQLTEEAANQCNNGT--DKCRGAEWEMEAPGWALSLGVTAMFAYAAASILLCLIAPRVDHLNSGVEELDVIEPAKPAVVGNVVEKTPQPEEKARAKDRRSAKTGVRAGGGGGRRAPTSTVEG--EPIAGPDPMTYALQQGHDEELGSAEDDEEDEVVYQNHQVHHAVINHSNPNPTQQVDDQASRQ 370
            M K GA+AG  Y+++MFFLL T+ LG AFI  SM+SRFFKW VE C  F  G  P        ++LD+ VDIGWR FTVT LD G    G C ++L+QG+TY +GD+QDN+ASLAGLGMVASW LGVLVALYT +AL+ ARHG RRGG S+  L+KWC+LF +G+VTATTVFWWLVEGKFGKR ++LAPRLFQ  EE A  C+N +  D+C  A W M+APGWALS+GVTAMFA+ AA+ LL +IAPRVDHLNSG+EE++V EPAKP V   V+EKTP PEEK R KDRRSAKTGVRAGG    +AP+STV+G     AGPDPMTYAL++G DEELGS +D     VVYQNHQVHHAVINHSNPNPTQ VDDQ + Q
Sbjct:    1 MAKVGAIAGSMYHMAMFFLLSTIVLGAAFIATSMSSRFFKWSVEGCAAFGNGDVPGSSERIIVYDLDVTVDIGWREFTVTTLDQGTETIGECLEELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTKWCALFTVGLVTATTVFWWLVEGKFGKRQESLAPRLFQRVEEGAKLCSNSSTEDQCNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVAEPAKPPVGNIVMEKTPLPEEKTRGKDRRSAKTGVRAGG----KAPSSTVQGGGPADAGPDPMTYALEEGRDEELGSVDDXXXXXVVYQNHQVHHAVINHSNPNPTQMVDDQGASQ 373          
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Match: A0A6H5KKN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN1_9PHAE)

HSP 1 Score: 459 bits (1181), Expect = 9.960e-157
Identity = 264/452 (58.41%), Postives = 318/452 (70.35%), Query Frame = 0
Query:    1 MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENCFAEGPAPAIGPDTY--QFNLDLEVDIGWRMFTVTLLDLGAAEAG-CFDDLEQGETYPLGDFQDNSASLAGLGMVASWGLGVLVALYTVIALVRARHGYRRGGASIVALSKWCSLFAIGVVTATTVFWWLVEGKFGKRTQALAPRLFQLTEEAANQCNNGT--DKCRGAEWEMEAPGWALSLGVTAMFAYAAASILLCLIAPRVDHLNSGVEELDVIEPAKPAVVGNVVEKTPQPEEKARAKDRRSAKTGVRAGGGGGRRAPTSTVEG-EPI-AGPDPMTYALQQGHDEELGSAEDDEEDEVVYQNHQVHHAVI-NHSNPNPTQQVDDQA----------SRQYAXXXXXXTSGGSYVTGGGRSFDE-GQSEFSDAASSQYYVQGQGTGGGSFMSSSSRGESFDEYR 433
            M K GA+AGR Y++++FFLL T+ LG AFI  SM+SRFFKW VE C A G     G       FNLD+ VDIGWR FTVT LD G    G C  +L+QG+TY +GD+QDN+ASLAGLGMVASW LGVLVALYT +AL+ ARHG RRGG S+  L+ WC+LF +G+VTATTVFWWL+EGKFGKR ++LAPRLFQ  EE A  C+NG+  D+C  A W M+APGWALS+GVTAMFA+ AA+ LL +IAPRVDHLNSG+EE++V+EPAKP V   V+EKTP PEEK R KDRRSAKTGVRAGG    +AP+STV+G +P  AGPDPMTYAL++G +++LGS +                    NHSNPNPTQ V+D            +R Y+      TSGGSY TGGGRSFDE  + ++S+ AS          G  SFMSSSSRGES DEYR
Sbjct:    1 MAKVGAIAGRMYHMALFFLLSTIVLGAAFIATSMSSRFFKWSVEGCSAFGNVAIPGSSDLIVDFNLDMTVDIGWREFTVTSLDQGTETMGECLGELKQGQTYSIGDYQDNNASLAGLGMVASWALGVLVALYTFVALLGARHGQRRGGVSLKMLTNWCALFTVGLVTATTVFWWLIEGKFGKRQESLAPRLFQRVEEGAELCSNGSTEDQCNEATWSMDAPGWALSMGVTAMFAFGAATFLLWIIAPRVDHLNSGIEEIEVVEPAKPPVGNIVMEKTPLPEEKTRGKDRRSAKTGVRAGG----KAPSSTVQGGDPADAGPDPMTYALEEGRNKQLGSVDXXXXXXXXXXXXXXXXXXXXNHSNPNPTQMVEDXXXXXXXXXXXLNRGYSRA----TSGGSYATGGGRSFDERSEGDYSETASXXXXXXXXXXGQ-SFMSSSSRGES-DEYR 442          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.480.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G002_ECTSI3.370e-16365.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN1_9PHAE9.960e-15758.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 218..240
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 241..433
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 135..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..134
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..217
NoneNo IPR availableTMHMMTMhelixcoord: 154..173
NoneNo IPR availableTMHMMTMhelixcoord: 218..240
NoneNo IPR availableTMHMMTMhelixcoord: 111..133
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1100713..1108040 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.480.1mRNA_C-linearis_contig10.480.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 1098322..1110314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.480.1 ID=prot_C-linearis_contig10.480.1|Name=mRNA_C-linearis_contig10.480.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=434bp
MPKGGAVAGRAYYLSMFFLLVTVSLGTAFIVLSMASRFFKWKVENCFAEG
PAPAIGPDTYQFNLDLEVDIGWRMFTVTLLDLGAAEAGCFDDLEQGETYP
LGDFQDNSASLAGLGMVASWGLGVLVALYTVIALVRARHGYRRGGASIVA
LSKWCSLFAIGVVTATTVFWWLVEGKFGKRTQALAPRLFQLTEEAANQCN
NGTDKCRGAEWEMEAPGWALSLGVTAMFAYAAASILLCLIAPRVDHLNSG
VEELDVIEPAKPAVVGNVVEKTPQPEEKARAKDRRSAKTGVRAGGGGGRR
APTSTVEGEPIAGPDPMTYALQQGHDEELGSAEDDEEDEVVYQNHQVHHA
VINHSNPNPTQQVDDQASRQYARGYSRGTSGGSYVTGGGRSFDEGQSEFS
DAASSQYYVQGQGTGGGSFMSSSSRGESFDEYR*
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