prot_C-linearis_contig10.467.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.467.1
Unique Nameprot_C-linearis_contig10.467.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length232
Homology
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BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Match: D7G015_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G015_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.850e-74
Identity = 140/222 (63.06%), Postives = 159/222 (71.62%), Query Frame = 0 
Query:   14 TTEAF--VPALLSAPRCRGASLPDPR--CASSTSPPARIRWAPTASSTSSTSSSARRMFEVVNFDGDGAEGEGEKGYADVTVREAVEWTMGKDSGFTYIDVRSAEEHDKLATVRGALCIPAFEIVMPEAPAAVEGQXXXXXQGEDDAVFAPDYNYEDLDYTIKPDFVDAMKSRFELDAKLLIGCKTDRSAKACELLVDAGFTQVYNVESQIFMRTRAPQVWS 231
            TT+AF  VP L S P    AS P     CA       R+RW P ASST      A RM      DG    GE EKGY DVTVREAVEWTM +DS F+YID+RSAEEH+KLATVRGALCIPAF++VMPEA    EG      Q  DD  +AP YN+E+ DYT+KPDFVD MK+RF+LDAKLLIGCKT RSAKAC+LLV+AGFT++YNVESQIFMRTRAP+VWS
Sbjct:   12 TTQAFLTVPPLTSPPSTACASNPQLHVPCARHL----RLRW-PRASST------AVRMLG--GEDG----GEEEKGYTDVTVREAVEWTMSRDSEFSYIDIRSAEEHEKLATVRGALCIPAFDLVMPEAEEQGEG---LDDQDGDDTGYAPAYNFEESDYTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACQLLVEAGFTEIYNVESQIFMRTRAPEVWS 213
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G015_ECTSI3.850e-7463.06Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036873Rhodanese-like domain superfamilyGENE3D3.40.250.10coord: 86..226
e-value: 2.1E-17
score: 65.2
IPR036873Rhodanese-like domain superfamilySUPERFAMILY52821Rhodanese/Cell cycle control phosphatasecoord: 88..217
NoneNo IPR availablePANTHERPTHR44542FAMILY NOT NAMEDcoord: 85..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..231
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.834
IPR001763Rhodanese-like domainPROSITEPS50206RHODANESE_3coord: 101..219
score: 10.133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:950569..953803 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.467.1mRNA_C-linearis_contig10.467.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 949994..953863 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.467.1 ID=prot_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=232bp
MVGPLSLFLLAIATTEAFVPALLSAPRCRGASLPDPRCASSTSPPARIRW
APTASSTSSTSSSARRMFEVVNFDGDGAEGEGEKGYADVTVREAVEWTMG
KDSGFTYIDVRSAEEHDKLATVRGALCIPAFEIVMPEAPAAVEGQEGQEG
QGEDDAVFAPDYNYEDLDYTIKPDFVDAMKSRFELDAKLLIGCKTDRSAK
ACELLVDAGFTQVYNVESQIFMRTRAPQVWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036873Rhodanese-like_dom_sf
IPR001763Rhodanese-like_dom