mRNA_C-linearis_contig10.467.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.467.1
Unique NamemRNA_C-linearis_contig10.467.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Match: D7G015_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G015_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 5.240e-71
Identity = 140/222 (63.06%), Postives = 159/222 (71.62%), Query Frame = 1 
Query:  100 TTEAF--VPALLSAPRCRGASLPDPR--CASSTSPPARIRWAPTASSTSSTSSSARRMFEVVNFDGDGAEGEGEKGYADVTVREAVEWTMGKDSGFTYIDVRSAEEHDKLATVRGALCIPAFEIVMPEAPAAVEGQXXXXXQGEDDAVFAPDYNYEDLDYTIKPDFVDAMKSRFELDAKLLIGCKTDRSAKACELLVDAGFTQVYNVESQIFMRTRAPQVWS 753
            TT+AF  VP L S P    AS P     CA       R+RW P ASST      A RM      DG    GE EKGY DVTVREAVEWTM +DS F+YID+RSAEEH+KLATVRGALCIPAF++VMPEA    EG      Q  DD  +AP YN+E+ DYT+KPDFVD MK+RF+LDAKLLIGCKT RSAKAC+LLV+AGFT++YNVESQIFMRTRAP+VWS
Sbjct:   12 TTQAFLTVPPLTSPPSTACASNPQLHVPCARHL----RLRW-PRASST------AVRMLG--GEDG----GEEEKGYTDVTVREAVEWTMSRDSEFSYIDIRSAEEHEKLATVRGALCIPAFDLVMPEAEEQGEG---LDDQDGDDTGYAPAYNFEESDYTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACQLLVEAGFTEIYNVESQIFMRTRAPEVWS 213
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G015_ECTSI5.240e-7163.06Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:949994..953863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-22_003290.1
Exons4
Model size1331
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.467.1prot_C-linearis_contig10.467.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 950569..953803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.8932776-UTR-C-linearis_contig10:949993..9505681622927330.8932776-UTR-C-linearis_contig10:949993..950568Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 949994..950568 -
1690879630.3125756-UTR-C-linearis_contig10:949993..9505681690879630.3125756-UTR-C-linearis_contig10:949993..950568Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 949994..950568 -
1622927330.943227-UTR-C-linearis_contig10:953803..9538631622927330.943227-UTR-C-linearis_contig10:953803..953863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 953804..953863 -
1690879630.370122-UTR-C-linearis_contig10:953803..9538631690879630.370122-UTR-C-linearis_contig10:953803..953863Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 953804..953863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.9022505-CDS-C-linearis_contig10:950568..9507301622927330.9022505-CDS-C-linearis_contig10:950568..950730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 950569..950730 -
1690879630.3284142-CDS-C-linearis_contig10:950568..9507301690879630.3284142-CDS-C-linearis_contig10:950568..950730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 950569..950730 -
1622927330.9103909-CDS-C-linearis_contig10:951398..9515641622927330.9103909-CDS-C-linearis_contig10:951398..951564Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 951399..951564 -
1690879630.338474-CDS-C-linearis_contig10:951398..9515641690879630.338474-CDS-C-linearis_contig10:951398..951564Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 951399..951564 -
1622927330.9183028-CDS-C-linearis_contig10:952923..9531151622927330.9183028-CDS-C-linearis_contig10:952923..953115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 952924..953115 -
1690879630.3481746-CDS-C-linearis_contig10:952923..9531151690879630.3481746-CDS-C-linearis_contig10:952923..953115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 952924..953115 -
1622927330.931354-CDS-C-linearis_contig10:953627..9538031622927330.931354-CDS-C-linearis_contig10:953627..953803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 953628..953803 -
1690879630.3622177-CDS-C-linearis_contig10:953627..9538031690879630.3622177-CDS-C-linearis_contig10:953627..953803Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 953628..953803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.467.1

>prot_C-linearis_contig10.467.1 ID=prot_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=232bp
MVGPLSLFLLAIATTEAFVPALLSAPRCRGASLPDPRCASSTSPPARIRW
APTASSTSSTSSSARRMFEVVNFDGDGAEGEGEKGYADVTVREAVEWTMG
KDSGFTYIDVRSAEEHDKLATVRGALCIPAFEIVMPEAPAAVEGQEGQEG
QGEDDAVFAPDYNYEDLDYTIKPDFVDAMKSRFELDAKLLIGCKTDRSAK
ACELLVDAGFTQVYNVESQIFMRTRAPQVWS*
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mRNA from alignment at C-linearis_contig10:949994..953863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.467.1 ID=mRNA_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3870bp|location=Sequence derived from alignment at C-linearis_contig10:949994..953863- (Chordaria linearis ClinC8C monoicous)
CCCTCTATCTCCCTCTCTCCTTTAGGACACGCACCCTGGAGTGCGGATAA
GGAGAGGATCATGGTGGGGCCGTTGAGCCTCTTCCTGCTGGCCATTGCCA
CAACGGAGGCCTTCGTGCCCGCGTTGCTGAGCGCACCCCGATGCCGGGGT
GCCAGCCTGCCGGATCCCCGTTGCGCTTCAAGTACCTCGCCACCAGCACG
AATACGGTGGGCACCGACAGCAAGCAGCACGTCTAGGTGAGGGTGGCGGG
TATGCAGCGCCATTCGTTTCGGGGAGCCTCTGCCGGGTAGTCGTTTGGTC
TTTCTGAGAGACTTGGGACCGAATGCATGTAGGCACAGCAGCAGTGAAAC
GAGAAACGACACAAACATGTAGACTTACCCCGGCGGAGCAGAGGTGCCAC
ACACACTCGTGCTGCTATTTCGACACTCCTGCGGTGATCGAGGCCTACCG
TCCACGAGCAGCTAATGCGCAAAGCTTGAGCTCTGTGTTGCGTGTTGTGT
GTGTGTACAAAACACAATTTCAAACCCACACATGTTGCGACAGCAGTTTG
GAGTCTGGTGGCTACAAGCACAGTCTAGACTAGTGTCGACTCGAGGCTTG
TTCGCGCTTTGTCCACACATACACACAGCCTCCTTATCGTGTATCTCTCC
ACTGCCGCCTGAAGCGCATGCACCAATTAGCCCCTCCCTGTGATCGTTTC
CAACACACCCTGGATGGGTTCCGTGCCCTTCATCAATACGGAATGTAGCA
CCAGCAGCAGCGCCCGGCGAATGTTCGAAGTGGTAAATTTCGACGGTGAT
GGGGCCGAGGGTGAAGGCGAAAAGGGCTACGCGGACGTGACCGTGCGAGA
GGCAGTGGAGTGGACGATGGGCAAGGACTCCGGGTTCACGTACATCGACG
TCAGGTCGGCAGAAGAGCACGACAAGCTCGCCACAGTCAGGTGTGGTATC
GTATCAAACGGAGAACGGCCGTTGCCATATACTGGTACCCTGGACCGATT
TTCAAAGCTCGATCACTCCTGAGCAAGAAGAGTAACAGCCCCGGCAAGGG
CTTTGTTGGACGGATAGATCTCGACGAGAGGATAGCTGTCCGAAGCTGTG
TCGGTTGGCATCGCAATCAAACTCGCTGCGGAGTCACCGAGTTGTGAAGA
TCGGCCCGAGGGGTGTGGTATCTTATGTTGTGTAATGGTACATACCAGTC
TATATATGATGGTCGAAGGTACCGCTGTGGCTGCGGTGAATTCGGTGTAG
ACTACTGTACGCACTTGAAACACCGAAACGCGGCATCATCCGAAACGCGG
CATCATCCGAAACGCGGCATTGTCCATCCAGATCATGACAGTCTTGCAGG
AACACTCTGTTGCAGTTGCGTGGGAATGGGCGGAACAGACACCCTCTCGA
AAGTGGCGTATTCTGTTTTCCCCGCGGGTGACATACATACATGCTATATT
CGAATTCGATCATCTGATGATGTCGTACACATGCCGTAGAGTGCCAAGCT
AAGGCATCCACATCCACATCCACATCCACAACCAGAAAATTCAGCGTCGT
GAGCATTGTCCGCTGCTGTACTGCTGTAGACAAAACAAGTATGGTACATA
CTGTGGGCGCCTCATGGTCTTTTGAGAGCTCCGCACGAGGTACCGTAATC
TAAACCCTGCCCCACATCCCGTTTTCGAGGCGAGACCAAACTACCGCCCG
CGTGATGGCTGTAAATATGTAAAAAAAACCAAAGAAAGCAAAGCTCCAAG
GGCATATTTAGATATTAAGTAGGGTATGGAAACCTCTACTTTACCTTGAG
TAGAGTAGAGTATTACACAGCCCAGTACTCTACTCATCTGAGTAGAGTAC
GGAGAGCTGTACTAAAACTACTATTGGGCTGAGTAGAGTATCGAGAGCTC
TACTAAACGTACTTTTGTAAAAGGGGAGTATGGAGAGCTCTACTAAAGCT
TGAGTAGAGTAGAGTACACCCAACCCAATACTCTACTCAGCTGAGTAGGG
TATGGAGAGCTGTACTAAACCTACTATTGGGCTGAGTAGAGTATATTTCG
AGTAAATACCCGCGGTAGGTTTAGTAGGTACTAAATAAACACCCTTGCAA
AGCTCAAGCACGAGAATCAAATTAAATCGCACTCCTCGTTGTTCGTAGTC
ATGCAACCCAAGCCTTTCTTTCATTTGTTATCGTCCCGTCCAGTTGCAGC
ACTCAGTCGAGATCGACACCGACCTTGACCTTGACCTTGACCTTGATCTG
CCCCCCTCCCTTCCCGGGTGTCGTGCGTGGGGTACATTTACGTTTACAGG
GGCGCCCTGTGCATCCCAGCCTTTGAGATCGTCATGCCAGAGGCCCCGGC
GGCGGTAGAGGGGCAGGAGGGGCAGGAGGGGCAGGGTGAGGACGATGCCG
TGTTTGCGCCGGACTACAACTACGAGGATTTAGACTACACGATCAAGCCA
GATTTCGTGGACGCGGTGAGTACTGGCATGATGGTACTGCTGCATCAGTG
TGCACAATTCGTAATTATGTAATTTAGAGTATTGGCAGGGCTATTGGTTG
TCTTGTCCTGGGGGGTACGTGAATCGTTCAGCCGGAGGCGTACGGCAACT
TCGCGTGTGACGCGGCTCTAGTGTTGCAGTCTATATAGCCTGCCGACAAA
AAAGTGAAGGTTGCGTTTGCGGCAGGGGCACAGCAGTATCATATGGCATG
ATCGGGGGAGTCAGTCGGAGGATCCTTCCTGCCCGTGACATGGCCTATAC
TGCACGCGCATGTTTACAGATTTGCAGAAGCAGGATCGCGCGTGGAGGTT
TGGTACCTCCACAGAACTACCTGCATTTCATCCTCTACCTTTCGTGCTCC
CCTCTACGATAGTGGTTTCGTCAAATACTTGTTACCAGACGAGACCGGGA
TGGTTTTTAATGTGAAGACAACAACAACAACAACAATTACCAGCGTTGAT
CCTGATCGTATTTCGTGGTTCATTTTAGAAGGATGCCCCTCGCCGAAACA
GCTGCCGATCTGAAGGCGTGAACGGCTTGGCGCTGCTCTCTCTTTCTTCG
TTCCCTCAACCGACTTTGGCCTCATCACGCAAAACGCGTGGTGTACGACG
ATCAATTTACCGTTTTTTTTTCTTTTTTTGCAGATGAAGTCACGGTTCGA
GCTCGACGCGAAGCTGCTGATTGGCTGCAAGACTGACAGATCCGCCAAGG
CTTGCGAGCTCCTGGTTGACGCAGGATTCACTCAGGTCTACAACGTGGAG
AGCCAGATTTTCATGAGAACACGGGCACCGCAAGTGTGGTCGTAAAGATG
CGTACTCGGAGAAAGCTCTGCCGTAATGCGGGCGGCGTACAATAAGGCCA
AGCGCTTTTAGAAATCACGCTTTACGAAGAATTAGGTACAGCGCGATTCG
ATGACCGGCGTTTTCTGGTTCTTCCGCGGACACACAAGGGGCATCAGGCG
TTGGTGTCTGGTGGCGTTGGTTTGGCTTTAGCGCACACGCAAGAAACAAG
AAGCGTTGTTGTGGATTTGAGTTTTATGTTGGCGCCCACGGAGCAGCATT
GACTGGATCTGTCTTTTATCTTTCATCTTTGCGCATTTGGCTCGTCCGTC
TATTTCTTTCTAGAGCCAGCACGATACGTTTCGTGACCCACCCGCAAGCG
TCTGGCCGGTGGTTGTTACGAGTGATGGCGGAGTTCGTCTTGGAAGCACT
CTGGACGTCTTTCAGTTTCCTGACCGCTTCTTATTCTCGTGTAATGCTTT
TTTCCGTCCTGCTGTGCCCCGTCTATCGGAAAAGACATGCTAGCACAGAC
CAGTCAGTAAAGTCGCGAAACACGAATCATCTATGTCCACAGCGAGGTGG
ATTCAGCAGGCACGCCGAAT
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Coding sequence (CDS) from alignment at C-linearis_contig10:949994..953863-

>mRNA_C-linearis_contig10.467.1 ID=mRNA_C-linearis_contig10.467.1|Name=mRNA_C-linearis_contig10.467.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at C-linearis_contig10:949994..953863- (Chordaria linearis ClinC8C monoicous)
ATGGTGGGGCCGTTGAGCCTCTTCCTGCTGGCCATTGCCACAACGGAGGC
CTTCGTGCCCGCGTTGCTGAGCGCACCCCGATGCCGGGGTGCCAGCCTGC
CGGATCCCCGTTGCGCTTCAAGTACCTCGCCACCAGCACGAATACGGTGG
GCACCGACAGCAAGCAGCACGTCTAGATGGTGGGGCCGTTGAGCCTCTTC
CTGCTGGCCATTGCCACAACGGAGGCCTTCGTGCCCGCGTTGCTGAGCGC
ACCCCGATGCCGGGGTGCCAGCCTGCCGGATCCCCGTTGCGCTTCAAGTA
CCTCGCCACCAGCACGAATACGGTGGGCACCGACAGCAAGCAGCACGTCT
AGCACCAGCAGCAGCGCCCGGCGAATGTTCGAAGTGGTAAATTTCGACGG
TGATGGGGCCGAGGGTGAAGGCGAAAAGGGCTACGCGGACGTGACCGTGC
GAGAGGCAGTGGAGTGGACGATGGGCAAGGACTCCGGGTTCACGTACATC
GACGTCAGGTCGGCAGAAGAGCACGACAAGCTCGCCACAGTCAGCACCAG
CAGCAGCGCCCGGCGAATGTTCGAAGTGGTAAATTTCGACGGTGATGGGG
CCGAGGGTGAAGGCGAAAAGGGCTACGCGGACGTGACCGTGCGAGAGGCA
GTGGAGTGGACGATGGGCAAGGACTCCGGGTTCACGTACATCGACGTCAG
GTCGGCAGAAGAGCACGACAAGCTCGCCACAGTCAGGGGCGCCCTGTGCA
TCCCAGCCTTTGAGATCGTCATGCCAGAGGCCCCGGCGGCGGTAGAGGGG
CAGGAGGGGCAGGAGGGGCAGGGTGAGGACGATGCCGTGTTTGCGCCGGA
CTACAACTACGAGGATTTAGACTACACGATCAAGCCAGATTTCGTGGACG
CGGGGCGCCCTGTGCATCCCAGCCTTTGAGATCGTCATGCCAGAGGCCCC
GGCGGCGGTAGAGGGGCAGGAGGGGCAGGAGGGGCAGGGTGAGGACGATG
CCGTGTTTGCGCCGGACTACAACTACGAGGATTTAGACTACACGATCAAG
CCAGATTTCGTGGACGCGATGAAGTCACGGTTCGAGCTCGACGCGAAGCT
GCTGATTGGCTGCAAGACTGACAGATCCGCCAAGGCTTGCGAGCTCCTGG
TTGACGCAGGATTCACTCAGGTCTACAACGTGGAGAGCCAGATTTTCATG
AGAACACGGGCACCGCAAGTGTGGTCGTAAATGAAGTCACGGTTCGAGCT
CGACGCGAAGCTGCTGATTGGCTGCAAGACTGACAGATCCGCCAAGGCTT
GCGAGCTCCTGGTTGACGCAGGATTCACTCAGGTCTACAACGTGGAGAGC
CAGATTTTCATGAGAACACGGGCACCGCAAGTGTGGTCGTAA
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