mRNA_C-linearis_contig10.464.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.464.1
Unique NamemRNA_C-linearis_contig10.464.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match: A0A6H5JBH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.580e-15
Identity = 52/156 (33.33%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:  367 CLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNA-LRVPRLPVRAVTVSKWPKRVLPCPPNRERPLSHIRR------VLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPVNDLV 813
            CL+ALA+ +    D +G+W++ST T  L+ VCLD+ ++CR+       HV VT  T R LWL G +D      +    R+P   VR V++ ++P +VL   P  ERP + +        V +   +       WWP++++E+RFG  FN P++  +
Sbjct:    8 CLEALAVAIRNTSD-KGVWFASTRT--LKTVCLDIYLSCRNRATARACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQVLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGSRFNHPLDSSI 160
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BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.600e-6
Identity = 54/179 (30.17%), Postives = 73/179 (40.78%), Query Frame = 1 
Query:  364 ACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNALRVPRLPVRAVTVSK---------------------------------WPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPV 801
            +CL  L + LN   D +  WY  TSTKELQ+  L+LC+ACR   +  T+H+ V A T R L           KR    RVPRL  R  T +                                  WP+R+      +  PL           NRL  G  W P +L++V  G +FN+P+
Sbjct:  135 SCLKTLTVALNETCDGKS-WY--TSTKELQLASLELCMACR---HYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPL-----------NRLLDGVSW-PASLRKVCLGHDFNQPI 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBH3_9PHAE1.580e-1533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE2.600e-630.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:932300..934467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1441
Cds size1110
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.464.1prot_C-linearis_contig10.464.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 933113..934467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.3786137-UTR-C-linearis_contig10:932299..9323981622927330.3786137-UTR-C-linearis_contig10:932299..932398Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 932300..932398 +
1690879630.0048227-UTR-C-linearis_contig10:932299..9323981690879630.0048227-UTR-C-linearis_contig10:932299..932398Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 932300..932398 +
1622927330.388018-UTR-C-linearis_contig10:932881..9331121622927330.388018-UTR-C-linearis_contig10:932881..933112Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 932882..933112 +
1690879630.0183508-UTR-C-linearis_contig10:932881..9331121690879630.0183508-UTR-C-linearis_contig10:932881..933112Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 932882..933112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.3966134-CDS-C-linearis_contig10:933112..9331371622927330.3966134-CDS-C-linearis_contig10:933112..933137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 933113..933137 +
1690879630.0331464-CDS-C-linearis_contig10:933112..9331371690879630.0331464-CDS-C-linearis_contig10:933112..933137Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 933113..933137 +
1622927330.407281-CDS-C-linearis_contig10:933382..9344671622927330.407281-CDS-C-linearis_contig10:933382..934467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 933383..934467 +
1690879630.043973-CDS-C-linearis_contig10:933382..9344671690879630.043973-CDS-C-linearis_contig10:933382..934467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 933383..934467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.464.1

>prot_C-linearis_contig10.464.1 ID=prot_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=370bp
MVNTTGPAGGIACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVA
CRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNALRVPRLPVRAVT
VSKWPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLQEVRFG
DEFNRPVNDLVWPASLRQLSFGYLFNQPIAGVVWPASLQQLSFGHSFNQY
FAGVKWPASLQQLSFGNMFNQSIADVVWPASLRRLSFRRDFNHYLARVNW
PDSLQQLSFGQCFNKPIARVVWPASLQKLSFEENFNQPITGVEWPASLRQ
LSFGRMFNRPTAGVVWPCNLQQLSFGNCFDQPIVGATWPASLQKLKFGAR
FNQPILGVAWPSSLQKLSFE
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mRNA from alignment at C-linearis_contig10:932300..934467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.464.1 ID=mRNA_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2168bp|location=Sequence derived from alignment at C-linearis_contig10:932300..934467+ (Chordaria linearis ClinC8C monoicous)
ATCCGACATCCACGCGAGACACAACTCAAGGAGCCGAGTTATTCTTACGA
GGGTGTGAAAGTCGACGCTTGGAACAACAGATCCAGGCAGCAGAGAAAGG
TATGTGCCGGGGGGCTGTCTGAACGCGGGAGGTGCGTGTTTGTGTCGCGG
TTTGCCTACAACTGCGTGTGCGGCGAAATGGAGAGGGAGGTTGCAGTTTA
CGAGATGATCATGAGCATAAGTCGCCAGAGTGCTCCATTCTTTGCAAGAG
TCCATGCTTACTCGGCTGACACACCTCGAAGGAACCCTACCTTGAGGTAC
ATACATTGTGACTGCTCTGTTGTGAAAATGTAGTACTCTGTTTCAAACTT
CAACGGCGCAGACATTTTGTGGATTATCGCCGTGTGGTGTGTGCCGTACA
TAGTCTTCTTGCTGACGAAGAGTTGATTTGGTGTGGTGGCGGCATCACTC
GCAACTCGTTCATGCCGCTGTCTTAAACGAGTTGGCGTTGCGTCCTCCCG
GTTGTCCTGGCACGGGCGGAATGACACACCAACATTGTCTTCCTCGCTCT
CTCCCGTGTCTGCCTACTGCTGCTGACCTCAGCGTCTTTTTTACACACCA
CCGCAAGAAGCGGCCTCTCACAGAGAGGCAACAAAAAAACGCTACTCTGT
AGACTGCATATATACGAGTGCCAGCGTGGTTTCAACTCGGGAAGCTAGAG
TTCTCGACAGCGACTTCCACATTACTACTTTGAGGAGGTGGAGCCGGCCT
CTAGACTAGAGTGCTTGTGGAGGCGGCTCAACTCCCCCCGTGAAGACACT
GCACGGAGGAGAGATGGTGAACACAACAGGACCTGCAGGTTGGTGTTCGG
CTTGATCGGGTGCGGTTGGTAGCGTTAGACGCCGGTCATACTTGCGCGCG
GAGAAAATGATCTTAGGGCTTATTTGGGGGGCGGTTGGGTTGGGTTGTGT
TTGACAAAAGTTGTACAACATACTGCTGGAAATGACTACGGCGGTGCTGT
CTCCCCGTCGGGCTGATGTGCTGCCTCTGCCGCTGCTGCTGCCGTACTTT
GCTGTCGTTCCGTTTGCCCGACAACGTTGATAGGTGGGATCGCATGCCTC
GACGCCCTGGCCATCACCTTGAACGCTGCCGTCGACCAGCGGGGGCTGTG
GTATTCTTCGACTTCGACGAAGGAGCTGCAGATGGTGTGCCTTGACCTGT
GCGTGGCTTGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGGTC
ACAGCCACAACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGACGA
CGGAAAGAAGAGACATAACGCACTGAGGGTGCCGCGCTTGCCCGTACGCG
CCGTGACGGTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAAAC
AGGGAACGCCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCAAA
TCGGCTTGGGTGGGGCCCACGGTGGTGGCCTGAGACCCTGCAGGAAGTTA
GATTCGGGGACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGGCC
TCGCTGCGGCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCCGG
AGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTTCA
ACCAGTACTTTGCCGGCGTGAAGTGGCCGGCTTCGCTGCAGCAGCTGTCG
TTCGGGAATATGTTCAACCAATCTATCGCCGACGTTGTGTGGCCGGCCTC
CCTGCGACGGCTATCCTTCCGACGTGATTTCAACCATTACCTTGCCCGAG
TGAACTGGCCGGATTCGCTGCAGCAGCTGTCGTTTGGGCAATGCTTCAAC
AAGCCTATCGCTCGAGTTGTGTGGCCGGCTTCCCTGCAGAAGTTGTCGTT
TGAAGAGAACTTCAACCAGCCCATCACCGGAGTTGAGTGGCCAGCGTCGC
TGCGACAGCTGTCCTTTGGGAGAATGTTCAATCGCCCTACCGCCGGAGTC
GTGTGGCCATGCAATCTCCAGCAGCTGTCGTTCGGAAACTGCTTTGACCA
GCCCATTGTCGGGGCCACCTGGCCTGCATCCCTGCAAAAGTTAAAGTTCG
GGGCTCGCTTCAACCAGCCCATCCTCGGGGTTGCATGGCCGAGTTCCCTG
CAGAAGTTGTCGTTTGAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:932300..934467+

>mRNA_C-linearis_contig10.464.1 ID=mRNA_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at C-linearis_contig10:932300..934467+ (Chordaria linearis ClinC8C monoicous)
ATGGTGAACACAACAGGACCTGCAGATGGTGAACACAACAGGACCTGCAG
GTGGGATCGCATGCCTCGACGCCCTGGCCATCACCTTGAACGCTGCCGTC
GACCAGCGGGGGCTGTGGTATTCTTCGACTTCGACGAAGGAGCTGCAGAT
GGTGTGCCTTGACCTGTGCGTGGCTTGTCGGTCCTCATGGAACATCTCGA
CCATGCACGTCGTGGTCACAGCCACAACATCTCGCCACCTGTGGCTCCAT
GGTGGGCAAGATGACGACGGAAAGAAGAGACATAACGCACTGAGGGTGCC
GCGCTTGCCCGTACGCGCCGTGACGGTGTCGAAATGGCCAAAGCGTGTTC
TACCGTGCCCTCCAAACAGGGAACGCCCATTGAGTCACATTCGGCGGGTG
CTTCGGCGTGGGTCAAATCGGCTTGGGTGGGGCCCACGGTGGTGGCCTGA
GACCCTGCAGGAAGTTAGATTCGGGGACGAGTTCAACAGACCTGTCAACG
ATTTGGTGTGGCCGGCCTCGCTGCGGCAGCTGTCGTTCGGGTATCTGTTC
AACCAGCCCATTGCCGGAGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATC
CTTCGGACACAGCTTCAACCAGTACTTTGCCGGCGTGAAGTGGCCGGCTT
CGCTGCAGCAGCTGTCGTTCGGGAATATGTTCAACCAATCTATCGCCGAC
GTTGTGTGGCCGGCCTCCCTGCGACGGCTATCCTTCCGACGTGATTTCAA
CCATTACCTTGCCCGAGTGAACTGGCCGGATTCGCTGCAGCAGCTGTCGT
TTGGGCAATGCTTCAACAAGCCTATCGCTCGAGTTGTGTGGCCGGCTTCC
CTGCAGAAGTTGTCGTTTGAAGAGAACTTCAACCAGCCCATCACCGGAGT
TGAGTGGCCAGCGTCGCTGCGACAGCTGTCCTTTGGGAGAATGTTCAATC
GCCCTACCGCCGGAGTCGTGTGGCCATGCAATCTCCAGCAGCTGTCGTTC
GGAAACTGCTTTGACCAGCCCATTGTCGGGGCCACCTGGCCTGCATCCCT
GCAAAAGTTAAAGTTCGGGGCTCGCTTCAACCAGCCCATCCTCGGGGTTG
CATGGCCGAGTTCCCTGCAGAAGTTGTCGTTTGAAGTGGGATCGCATGCC
TCGACGCCCTGGCCATCACCTTGAACGCTGCCGTCGACCAGCGGGGGCTG
TGGTATTCTTCGACTTCGACGAAGGAGCTGCAGATGGTGTGCCTTGACCT
GTGCGTGGCTTGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGG
TCACAGCCACAACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGAC
GACGGAAAGAAGAGACATAACGCACTGAGGGTGCCGCGCTTGCCCGTACG
CGCCGTGACGGTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAA
ACAGGGAACGCCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCA
AATCGGCTTGGGTGGGGCCCACGGTGGTGGCCTGAGACCCTGCAGGAAGT
TAGATTCGGGGACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGG
CCTCGCTGCGGCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCC
GGAGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTT
CAACCAGTACTTTGCCGGCGTGAAGTGGCCGGCTTCGCTGCAGCAGCTGT
CGTTCGGGAATATGTTCAACCAATCTATCGCCGACGTTGTGTGGCCGGCC
TCCCTGCGACGGCTATCCTTCCGACGTGATTTCAACCATTACCTTGCCCG
AGTGAACTGGCCGGATTCGCTGCAGCAGCTGTCGTTTGGGCAATGCTTCA
ACAAGCCTATCGCTCGAGTTGTGTGGCCGGCTTCCCTGCAGAAGTTGTCG
TTTGAAGAGAACTTCAACCAGCCCATCACCGGAGTTGAGTGGCCAGCGTC
GCTGCGACAGCTGTCCTTTGGGAGAATGTTCAATCGCCCTACCGCCGGAG
TCGTGTGGCCATGCAATCTCCAGCAGCTGTCGTTCGGAAACTGCTTTGAC
CAGCCCATTGTCGGGGCCACCTGGCCTGCATCCCTGCAAAAGTTAAAGTT
CGGGGCTCGCTTCAACCAGCCCATCCTCGGGGTTGCATGGCCGAGTTCCC
TGCAGAAGTTGTCGTTTGAA
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