prot_C-linearis_contig10.460.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.460.1
Unique Nameprot_C-linearis_contig10.460.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length295
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.460.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 133..155
e-value: 6.0E-4
score: 17.5
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 136..152
e-value: 0.13
score: 12.8
NoneNo IPR availablePANTHERPTHR19862FAMILY NOT NAMEDcoord: 189..270
coord: 15..192
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 76..282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:886026..889056 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.460.1mRNA_C-linearis_contig10.460.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 886026..889056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.460.1 ID=prot_C-linearis_contig10.460.1|Name=mRNA_C-linearis_contig10.460.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=295bp
VFGRNVTSLHISGTSTLSENSASTAGGAFAAERSSLTMDTQRSEFANNTA
VSGDGGAISLDGRGDIVDDGTTALLIGGTTFFTGNAAKNSSGGALHVQSS
TLTVVGNTTFLFNVAGIDGGAVHTTQCREVGVRGDTLFESNTVPGSGGGF
YGGSCDKVSLEDATFRSNHATWGGAVALVSCGEDATVRGSAATTSACTFD
GNEASDGGGIYSASGFDQISDSTFVNNVAASSGGALAHSSVLLALTGSTF
RNNTAREEGYAVMSLGPLHSMDGLVFDANVQYCGVGTYGYERIEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence