mRNA_C-linearis_contig10.460.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.460.1
Unique NamemRNA_C-linearis_contig10.460.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:886026..889056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size885
Cds size885
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927329.766512-CDS-C-linearis_contig10:886025..8862221622927329.766512-CDS-C-linearis_contig10:886025..886222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886026..886222 -
1690879629.5923724-CDS-C-linearis_contig10:886025..8862221690879629.5923724-CDS-C-linearis_contig10:886025..886222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886026..886222 -
1622927329.7753677-CDS-C-linearis_contig10:886440..8866081622927329.7753677-CDS-C-linearis_contig10:886440..886608Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886441..886608 -
1690879629.6040764-CDS-C-linearis_contig10:886440..8866081690879629.6040764-CDS-C-linearis_contig10:886440..886608Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886441..886608 -
1622927329.783803-CDS-C-linearis_contig10:886813..8869751622927329.783803-CDS-C-linearis_contig10:886813..886975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886814..886975 -
1690879629.615098-CDS-C-linearis_contig10:886813..8869751690879629.615098-CDS-C-linearis_contig10:886813..886975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 886814..886975 -
1622927329.7921517-CDS-C-linearis_contig10:887347..8874281622927329.7921517-CDS-C-linearis_contig10:887347..887428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 887348..887428 -
1690879629.624436-CDS-C-linearis_contig10:887347..8874281690879629.624436-CDS-C-linearis_contig10:887347..887428Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 887348..887428 -
1622927329.8042886-CDS-C-linearis_contig10:887726..8878371622927329.8042886-CDS-C-linearis_contig10:887726..887837Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 887727..887837 -
1690879629.6347394-CDS-C-linearis_contig10:887726..8878371690879629.6347394-CDS-C-linearis_contig10:887726..887837Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 887727..887837 -
1622927329.8124516-CDS-C-linearis_contig10:888336..8884231622927329.8124516-CDS-C-linearis_contig10:888336..888423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 888337..888423 -
1690879629.646168-CDS-C-linearis_contig10:888336..8884231690879629.646168-CDS-C-linearis_contig10:888336..888423Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 888337..888423 -
1622927329.8205235-CDS-C-linearis_contig10:888977..8890561622927329.8205235-CDS-C-linearis_contig10:888977..889056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 888978..889056 -
1690879629.6568642-CDS-C-linearis_contig10:888977..8890561690879629.6568642-CDS-C-linearis_contig10:888977..889056Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 888978..889056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.460.1prot_C-linearis_contig10.460.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 886026..889056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.460.1

>prot_C-linearis_contig10.460.1 ID=prot_C-linearis_contig10.460.1|Name=mRNA_C-linearis_contig10.460.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=295bp
VFGRNVTSLHISGTSTLSENSASTAGGAFAAERSSLTMDTQRSEFANNTA
VSGDGGAISLDGRGDIVDDGTTALLIGGTTFFTGNAAKNSSGGALHVQSS
TLTVVGNTTFLFNVAGIDGGAVHTTQCREVGVRGDTLFESNTVPGSGGGF
YGGSCDKVSLEDATFRSNHATWGGAVALVSCGEDATVRGSAATTSACTFD
GNEASDGGGIYSASGFDQISDSTFVNNVAASSGGALAHSSVLLALTGSTF
RNNTAREEGYAVMSLGPLHSMDGLVFDANVQYCGVGTYGYERIEV
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mRNA from alignment at C-linearis_contig10:886026..889056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.460.1 ID=mRNA_C-linearis_contig10.460.1|Name=mRNA_C-linearis_contig10.460.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3031bp|location=Sequence derived from alignment at C-linearis_contig10:886026..889056- (Chordaria linearis ClinC8C monoicous)
GTTTTCGGACGGAATGTGACCAGCTTGCACATCAGCGGCACATCAACGCT
CTCGGAGAATTCGGCCAGCACCGCCGGAGGTATTATTTTGAGAACCTGTC
GGTTTCATTGGTTCATATGCTCTTATGCTCTTACTTGGTAGGCACACAGG
TCTTCATGTGGGCGGTGCGATGTAAAAATGATAAGGTGTATCCCCTCAAC
TCCTGGTCGCCGAATTCCGCACGTCAGTGCGCGCCTTACGGACGTGGCCG
GCGGCAGAGGGCATGCAACATGCCACAGGCACATAATGCGCACAACGATG
GAGGGGGCTTTTGCAAGCCGTCACCCAATCATCAACTAACCGCGCCTCTG
TCCGATGTATTTATATTAACGCATATTATTGCAGGTGCCGTATACACAGC
TGGGTGTGATACCACTGTCGAGGGCGACGCAAGCTTTGAGTTCAACTCGG
CGGGAACATTTGGAGGTGAGGAGGTTATTTTCATGGGGCTAGTTTGGAAT
AGCATGTCTTTCACCCGACCTGACCGAGCCTGACTGGCCGCTTTCTCTTT
TGCTTCTCTTGTCTCTTTCGCTTCTCTCTCTTTCTCTTTTGTTTCTCCGC
TCTCTCTCAATCTCCATGTGTCGGTTAATCCAGGCGCTTTCGCGGCGGAG
CGGAGTTCCCTGACAATGGATACCCAAAGGAGCGAGTTTGCAAACAACAC
AGCCGTATCGGGAGATGGAGGTAGATCAATCTCATGTGCAAATGTAAATG
TATGTACATAAATACGTAGAGCGTTTTAAATAGTGTTCCGAGTGGCGGGG
TGCTAGAGGAGTACATTCTGCTTTCCCGGAGATTGTATCATAGGCGGGTT
GATCTCTCATCATACAGCCTTATCGCTGCATGCACATCCTTCCAGTCGAG
TAGCCCGCTCCCTTCCACCAGTTTGGGCCGAAACCAATCTGTCTACCCGT
TGCTTGCTTGTGGTTTGTCTCGAGGAAACAGCGTTCCTCATTGTATCGGC
CATAGGCCATTAGTCTCTCCCCGGCGAGGAGGAGGACAGCACTGCGGCAG
TTGAACGCTCCGGGATAAATAACCCGTTGCCATATGTCATGAGCTATGAG
AACCTTGGCCAGTTGCGTTGAATTCCCACGCCCTAAGCCGTAGTTTCTTC
GTCGCTGCCACCCGGTGAAAAGAACCACGAGCTTGTAATATTTCGACACC
ATGACCTGGCCGCAAACAGGTGCGATTTCCTTGGACGGACGCGGGGATAT
CGTCGACGACGGCACCACAGCGTTGCTCATCGGCGGGACTACATTTTTTA
CAGGGAACGCGGCGAAAAACAGCAGCGGGGGTAAGGGATGAACTAAACTG
AACGGCAGGTTTGCATGTTTGCAGGTGGATTGAGCTGTCATGACCTGACT
CGAGCAGGTGGTCGGTGAGAAGCAGTGCAACATTGGGCTCTACGAAGCAC
ATTCCCGCGCTCTCGCCGCGGCTGAATGTCCGGAATGTGCGGAGATCACT
CACGTGTCTTTGCGCACGGGTTACCTCGTGCTGCTGGTCAGATTTGATAC
AGCACGACACCCATGTGGCACGGCGGTGACGCCAACATTTCCCCGCACGT
TGCATTACGTCTTCGCTCGTCAAACAAGGTGCTCTTCACGTGCAAAGTTC
CACCCTCACAGTCGTCGGCAACACGACATTCCTCTTCAACGTCGCAGGGA
TCGACGGAGGTGAGTGAGGCGTGAGGGGCGAGGGGTGAGGCAGGTTGAGG
TCAAACCTATTTCTAAATCATACTCTACAATCTAATCCTTCTTTTCCGTA
GGGTGCTCATGGTACAGTTTGCCACGAATTGGTCACACGTTTATTTCTCA
TTCCGTCAACGCGCTGCAAAATCTGCCTGTTTAATTTAGGCGAAAGGTAG
AGTTGCAGCAATGTTGTTGGTTTCAAGAAAATAAAGTATGAAGCCGCACC
GTGTTACTGCAGGGGGCCGAAAAACACCTCTCTGTTTGTCTTTTCTATTC
CAATGGCTCTCCTTCTTACTGTACGAATCTTCCCTTCTCCCACTGTAATT
ACCTGCATTCGTGACTACGGTGAAACGATAGGAGCGGTGCACACAACGCA
GTGCCGAGAGGTCGGGGTTAGAGGCGACACTCTGTTCGAGTCTAACACCG
TACCCGGTTCGGGCGGAGGCTTCTACGGCGGGAGTTGCGACAAGGTGTCT
CTAGAAGACGCCACCTTCCGCTCCAACCACGCCACATGGGGAGGTGAGAG
AGACACCCGACGGGATTAAGCACGTAACATGTTGTCACTTTGACGTCTAC
GATGCCCTATTTACTGCCGAATGTGCCACATTGGAGCCAACGCGCTTTCG
AAGACTCAAGGTCCTCACGCTGTCATCGGGTTGACGGGACCCTGACGAGC
AGAACGATGTTCGTTCGTTGCCCCTCCCCTGATCCTGTCCGTCTTCAGGA
GCAGTGGCGCTGGTCTCATGTGGCGAGGATGCGACCGTGCGGGGTTCGGC
AGCTACAACGAGTGCGTGTACCTTTGACGGGAACGAAGCCAGTGACGGCG
GGGGCATTTACTCCGCTTCTGGATTCGATCAGATCTCCGACTCTACGTTC
GTGAACAACGTCGCAGGTATCTCGGGACAGGCGCCAGAAGAGCAGTTTGG
CATTTGTTTTTGCGGTTTAGGGCGCGCGGCGTAATACCCCCCACCTTCCA
CCTTCCACCTTCCACCTTCCACCTTCCACCTTCCGGGGCATGCATGTGTT
CTCTTGTCGCCGAGTATGAGAGATGGGCAATTTAATGTTTAATGTACCTG
ACCACCCCCGCATCATATCGAAATTATCCTTCAGCATCCTCGGGAGGTGC
GTTGGCGCACTCTTCGGTGCTCCTGGCCTTGACGGGCAGCACGTTCCGAA
ACAACACGGCCAGAGAAGAAGGCTACGCGGTCATGAGTCTAGGGCCACTT
CACTCCATGGACGGCCTCGTGTTCGATGCCAACGTGCAGTATTGCGGCGT
CGGAACTTACGGCTACGAGAGAATCGAGGTA
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Coding sequence (CDS) from alignment at C-linearis_contig10:886026..889056-

>mRNA_C-linearis_contig10.460.1 ID=mRNA_C-linearis_contig10.460.1|Name=mRNA_C-linearis_contig10.460.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at C-linearis_contig10:886026..889056- (Chordaria linearis ClinC8C monoicous)
GTTTTCGGACGGAATGTGACCAGCTTGCACATCAGCGGCACATCAACGCT
CTCGGAGAATTCGGCCAGCACCGCCGGAGGTTTTCGGACGGAATGTGACC
AGCTTGCACATCAGCGGCACATCAACGCTCTCGGAGAATTCGGCCAGCAC
CGCCGGAGGCGCTTTCGCGGCGGAGCGGAGTTCCCTGACAATGGATACCC
AAAGGAGCGAGTTTGCAAACAACACAGCCGTATCGGGAGATGGAGGCGCT
TTCGCGGCGGAGCGGAGTTCCCTGACAATGGATACCCAAAGGAGCGAGTT
TGCAAACAACACAGCCGTATCGGGAGATGGAGGTGCGATTTCCTTGGACG
GACGCGGGGATATCGTCGACGACGGCACCACAGCGTTGCTCATCGGCGGG
ACTACATTTTTTACAGGGAACGCGGCGAAAAACAGCAGCGGGGGTGCGAT
TTCCTTGGACGGACGCGGGGATATCGTCGACGACGGCACCACAGCGTTGC
TCATCGGCGGGACTACATTTTTTACAGGGAACGCGGCGAAAAACAGCAGC
GGGGGTGCTCTTCACGTGCAAAGTTCCACCCTCACAGTCGTCGGCAACAC
GACATTCCTCTTCAACGTCGCAGGGATCGACGGAGGTGCTCTTCACGTGC
AAAGTTCCACCCTCACAGTCGTCGGCAACACGACATTCCTCTTCAACGTC
GCAGGGATCGACGGAGGAGCGGTGCACACAACGCAGTGCCGAGAGGTCGG
GGTTAGAGGCGACACTCTGTTCGAGTCTAACACCGTACCCGGTTCGGGCG
GAGGCTTCTACGGCGGGAGTTGCGACAAGGTGTCTCTAGAAGACGCCACC
TTCCGCTCCAACCACGCCACATGGGGAGGAGCGGTGCACACAACGCAGTG
CCGAGAGGTCGGGGTTAGAGGCGACACTCTGTTCGAGTCTAACACCGTAC
CCGGTTCGGGCGGAGGCTTCTACGGCGGGAGTTGCGACAAGGTGTCTCTA
GAAGACGCCACCTTCCGCTCCAACCACGCCACATGGGGAGGAGCAGTGGC
GCTGGTCTCATGTGGCGAGGATGCGACCGTGCGGGGTTCGGCAGCTACAA
CGAGTGCGTGTACCTTTGACGGGAACGAAGCCAGTGACGGCGGGGGCATT
TACTCCGCTTCTGGATTCGATCAGATCTCCGACTCTACGTTCGTGAACAA
CGTCGCAGGAGCAGTGGCGCTGGTCTCATGTGGCGAGGATGCGACCGTGC
GGGGTTCGGCAGCTACAACGAGTGCGTGTACCTTTGACGGGAACGAAGCC
AGTGACGGCGGGGGCATTTACTCCGCTTCTGGATTCGATCAGATCTCCGA
CTCTACGTTCGTGAACAACGTCGCAGCATCCTCGGGAGGTGCGTTGGCGC
ACTCTTCGGTGCTCCTGGCCTTGACGGGCAGCACGTTCCGAAACAACACG
GCCAGAGAAGAAGGCTACGCGGTCATGAGTCTAGGGCCACTTCACTCCAT
GGACGGCCTCGTGTTCGATGCCAACGTGCAGTATTGCGGCGTCGGAACTT
ACGGCTACGAGAGAATCGAGGTACATCCTCGGGAGGTGCGTTGGCGCACT
CTTCGGTGCTCCTGGCCTTGACGGGCAGCACGTTCCGAAACAACACGGCC
AGAGAAGAAGGCTACGCGGTCATGAGTCTAGGGCCACTTCACTCCATGGA
CGGCCTCGTGTTCGATGCCAACGTGCAGTATTGCGGCGTCGGAACTTACG
GCTACGAGAGAATCGAGGTA
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