mRNA_C-linearis_contig10.459.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.459.1
Unique NamemRNA_C-linearis_contig10.459.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5JZF4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF4_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 3.900e-92
Identity = 168/365 (46.03%), Postives = 214/365 (58.63%), Query Frame = 3
Query:  822 FVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            F+P  D    A    S    A      AA+ P   PF +G T  +++IN+FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+   VD GTEWT   FR FC +  I +EFT P   Q N  VE+AIWR++K G   RRSA   F +D++ IP +D RGD LW+ES ++     N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:   31 FIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINHFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVKRYDLGRIECFHVDNGTEWTRGDFRRFCDDNCIGVEFTTPGVLQYNGVVESAIWRIVKAGMTARRSAGRVFNVDFASIPGLDERGDLLWMESAKWATDALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 395          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 1.150e-91
Identity = 187/419 (44.63%), Postives = 236/419 (56.32%), Query Frame = 3
Query:  666 ASVVPSTGVFPPTNTGVVTFLDGSVMQIPYTLEGL--RLGSDVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            AS     G FP  + G     D SV+     ++G       D   +F+ E D   V  G       G   D  AA       A+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA   F +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:  556 ASGFECVGTFPGMDLG-----DTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVA-GVLDSIDGGSDFDLGAA-------ALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 961          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 1.310e-91
Identity = 174/365 (47.67%), Postives = 219/365 (60.00%), Query Frame = 3
Query:  822 FVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            F+P  D    A    S    A      AA+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA   F +D++ IP++D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:  237 FIPESDAANAAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPSLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 601          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5KAL3_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL3_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 1.970e-91
Identity = 162/342 (47.37%), Postives = 203/342 (59.36%), Query Frame = 3
Query:  783 DVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLK 1805
            D   +F+ E D   V  G +     G   D  AA       A+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG R   PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G +++ RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA     +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK
Sbjct:   25 DFFPVFIPECDAANVA-GVFDSIDGGADFDLGAA-------ALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRIHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVESSRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVLNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLK 358          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 6.920e-91
Identity = 165/352 (46.88%), Postives = 212/352 (60.23%), Query Frame = 3
Query:  822 FVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG 1874
            F+P  D    A    S    +      AA+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG R   PR  G RAS+P    HLDLCG +  S+ G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G V RRSA L   ++++ I  +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G
Sbjct:  215 FIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGCVHLDLCGPLMPSMGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMVARRSAALVLNVEFASITGLDPRGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEG 566          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 1.540e-90
Identity = 171/365 (46.85%), Postives = 216/365 (59.18%), Query Frame = 3
Query:  822 FVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            F+P  D    A    S    A      AA+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG R   PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G ++  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA   F +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ     YL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:  539 FIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRVECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCSYLNGGENHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 903          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 2.120e-90
Identity = 187/419 (44.63%), Postives = 236/419 (56.32%), Query Frame = 3
Query:  666 ASVVPSTGVFPPTNTGVVTFLDGSVMQIPYTLEGL--RLGSDVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            AS     G FP  + G     D SV+     ++G       D   +F+ E D   V  G       G   D  AA       A+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA   F +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:  702 ASGFECVGTFPGMDLG-----DTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVA-GVLDSIDGGSDFDLGAA-------ALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 1107          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 2.670e-90
Identity = 187/419 (44.63%), Postives = 236/419 (56.32%), Query Frame = 3
Query:  666 ASVVPSTGVFPPTNTGVVTFLDGSVMQIPYTLEGL--RLGSDVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPP 1907
            AS     G FP  + G     D SV+     ++G       D   +F+ E D   V  G       G   D  AA       A+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA   F +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A  G   G   AP  PP
Sbjct:  556 ASGFECVGTFPGMDLG-----DTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVA-GVLDSIDGGSDFDLGAA-------ALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPP 961          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5LE52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE52_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.620e-90
Identity = 184/427 (43.09%), Postives = 237/427 (55.50%), Query Frame = 3
Query:  684 TGVFPPTNTGVVTFLDGSVMQIPYTLEGLRLGSDVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAF------------AAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAASAG--KGEKLAPEFPPRSSV 1919
            T V PP  +  V  L  S  +   T  G+ LG    ++F DE  M+      Y ++    + +  AA+                 AA+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG LE C  C+  KG RA  P+  G RAS+P    HLDLCG +  SL G +YL V VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  R+D GTEWT   FR  C + GI +EFT P  PQ N  VE+AIWR+MK G   RRSA     +DY+ I  +D RGDRLWLES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+ R  KLDDQ    YYL     H   TV+VLK STGR  ++ ++  ++ A A  G   G   AP  PP + V
Sbjct:  413 TTVVPPAGSTDVVPLSASGFECVGTFPGMDLGDT--SVFTDELLMDGYDKTPYQDFFPAFMPENEAAIAAGVMDGIDGVGFDVGVAALGPGASPFSIGSTDKSVDINRFHRSLAHACEPLLRETARQRGITLTGTLEPCSDCMKAKGKRASVPKGPGARASKPLGRVHLDLCGPLAPSLGGNLYLFVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRIDNGTEWTRGEFRRCCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAARVLNVDYASITGLDPRGDRLWLESAKWAADALNQSATKANPGRRSPHELFTGQQGPFRVLPFFQPGYMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSCVTSAPAGKGGSAGIPAAPTPPPFTPV 837          
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Match: A0A6H5KBH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH5_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.570e-89
Identity = 168/375 (44.80%), Postives = 212/375 (56.53%), Query Frame = 3
Query:  822 FVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKRRPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPCVLVKGARAHTPRA-GGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFSRFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFRMFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRR--------------------------SAVLEFGIDYSGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDAIIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRPCHSRDIVFISGAAA 1865
            F+P  D    A    S    A      AA+ P   PF +G T  +++IN FHR   H CE LLRETA+Q+GI LTG+LE C  C+  KG RA  PR  G RAS+P    HLDLCG +  SL G +YLLV VDS SR+   YGLRRKS AL   K  + D+ +Y  G I+  RVD GTEWT   FR FC + GI +EFT P  PQ N  VE+AIWR+MK G   RR                          SA   F +D++ IP +D RGDRLW+ES ++ A   N+S TKANPG  SP+E+FTG +    ++PF QP  MR+    KLDDQ    YYL     H   TV+VLK STGR  ++ ++ +++ A A
Sbjct:  237 FIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKPLGRVHLDLCGPLVPSLGGNLYLLVAVDSASRWNKVYGLRRKSDALAATKRLLADVGRYDLGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRXXXXXXXXXXXXXXXXXXXXXXXXXXSAGRVFDVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDCCTKLDDQATLCYYLNGGENHPSGTVKVLKASTGRVVYTNNVSWVTSAPA 611          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZF4_9PHAE3.900e-9246.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JL48_9PHAE1.150e-9144.63Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JG40_9PHAE1.310e-9147.67Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KAL3_9PHAE1.970e-9147.37Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KJH0_9PHAE6.920e-9146.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8D5_9PHAE1.540e-9046.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J4N2_9PHAE2.120e-9044.63Integrase catalytic domain-containing protein n=18... [more]
A0A6H5KBD4_9PHAE2.670e-9044.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LE52_9PHAE3.620e-9043.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBH5_9PHAE1.570e-8944.80Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:862363..864590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue4.8e-23
Seed eggNOG ortholog3712.Bo1g005190.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size2228
Cds size1755
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927329.7200723-UTR-C-linearis_contig10:862362..8628351622927329.7200723-UTR-C-linearis_contig10:862362..862835Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 862363..862835 +
1690879629.5692782-UTR-C-linearis_contig10:862362..8628351690879629.5692782-UTR-C-linearis_contig10:862362..862835Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 862363..862835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927329.7301373-CDS-C-linearis_contig10:862835..8645901622927329.7301373-CDS-C-linearis_contig10:862835..864590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 862836..864590 +
1690879629.5819185-CDS-C-linearis_contig10:862835..8645901690879629.5819185-CDS-C-linearis_contig10:862835..864590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 862836..864590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.459.1prot_C-linearis_contig10.459.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 862836..864590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.459.1

>prot_C-linearis_contig10.459.1 ID=prot_C-linearis_contig10.459.1|Name=mRNA_C-linearis_contig10.459.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=585bp
MLPSTGDTGVGPENAPGDMLSTCADVVPDVFGFSPIDDDDVVPWNNSSDE
PFCGAEGERFPSALASVVPSTGVFPPTNTGVVTFLDGSVMQIPYTLEGLR
LGSDVLNIFLDEGDMEFVPNGDYGEYANGPLSDTAAALLLRAFAAIAPKR
RPFRVGPTTNALEINYFHRCSGHLCEYLLRETAKQQGIKLTGRLETCVPC
VLVKGARAHTPRAGGRASEPGVTYHLDLCGAVTASLCGCMYLLVVVDSFS
RFMLAYGLRRKSAALDGFKVAITDLAKYGRGDIQTIRVDMGTEWTSDPFR
MFCANAGIRMEFTAPNTPQQNAPVENAIWRLMKGGTVCRRSAVLEFGIDY
SGIPNMDSRGDRLWLESVRFTAACFNRSGTKANPGNMSPYEVFTGTKPDA
IIVPFLQPLIMRKQRVIKLDDQGEPGYYLGQSHQHGRSTVRVLKVSTGRP
CHSRDIVFISGAAASAGKGEKLAPEFPPRSSVRRSAQLCHLHRQHRRIRR
RPTLRRRRSPRCRLRRPRNRSRCCRGRMAACGLAACDASAYSAVTHAAPA
AACAAARGRWATCGFADTGGDNASALSGGVAASIQ
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mRNA from alignment at C-linearis_contig10:862363..864590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.459.1 ID=mRNA_C-linearis_contig10.459.1|Name=mRNA_C-linearis_contig10.459.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2228bp|location=Sequence derived from alignment at C-linearis_contig10:862363..864590+ (Chordaria linearis ClinC8C monoicous)
GTGCGTGGTGATGACATTCCTATGCCTCTGAGATTCGTGCAAGTAGGGAG TGGTGAAATGCTGCGAGTTGTGACGAGAGGTAGCCTGATCGTTGACTTCC ACCGACGAAATTCTGATGACGTATGCGAGGATGTGCGAGTGGTTTTGACT GGAGTGTCCGCCGTCGAGGGCATGGGATTCAATTTGCTTTCTCTGCATGC ATTGTCTGAAACGATGGCCATCACGATCGACCCCCTTGGAGTGCACCTTC CCGCCAATGCTGTATCCCCAATGGGTTGACTTTCCCCCGGAATTCGTCCG GCGCGTCCTTGTATGCAACGCGTGTGCAATTCACCGGCACGGCTTTCGCT GCCTCTGGTGTTTCCTCTGGTTCGGTTTACCCCCACGAACCCCCCCCCGG TGATTTCCCCCCCGACCCGTCGCTGCTGCCGTTCAATGGTGGTGGCAACG GGGGTGGAGGGGCACCAAATGTGATGCTTCCATCCACCGGCGATACCGGA GTTGGGCCAGAAAATGCCCCCGGTGATATGCTTTCCACTTGCGCCGATGT AGTGCCTGACGTGTTTGGTTTCTCGCCCATCGATGACGACGATGTAGTGC CCTGGAATAACTCCTCTGACGAACCGTTTTGCGGGGCGGAAGGGGAGAGG TTTCCGTCCGCTCTCGCGAGCGTAGTACCTTCGACTGGCGTTTTTCCGCC CACAAACACGGGTGTAGTGACTTTTCTCGACGGGAGTGTGATGCAAATCC CATACACGCTTGAGGGGTTGAGGCTGGGTTCTGACGTGCTGAATATTTTT TTGGATGAGGGGGACATGGAATTTGTGCCCAACGGCGACTACGGCGAATA CGCCAATGGCCCTTTGTCTGACACAGCAGCTGCGCTTTTGTTGAGGGCTT TTGCTGCGATTGCCCCCAAACGTCGACCTTTCCGTGTTGGCCCGACCACT AACGCTTTGGAGATAAATTATTTCCACCGTTGCTCCGGCCACCTCTGCGA GTACCTGTTGAGGGAAACTGCAAAACAACAGGGTATCAAGCTCACGGGGA GGTTGGAGACGTGCGTGCCGTGCGTGTTGGTGAAGGGGGCGCGGGCTCAC ACCCCGAGGGCTGGCGGACGAGCGAGCGAGCCGGGTGTTACGTACCACCT GGACCTCTGTGGCGCCGTGACCGCGTCGCTCTGTGGCTGTATGTACTTGC TGGTGGTGGTGGACAGCTTCTCGAGGTTCATGCTCGCGTACGGCCTGCGG CGGAAGTCGGCTGCGCTCGACGGGTTCAAGGTGGCCATCACGGACCTCGC CAAGTACGGCCGCGGCGACATCCAGACCATCCGCGTCGACATGGGCACCG AGTGGACCTCCGACCCGTTCCGCATGTTCTGCGCCAATGCTGGGATCCGC ATGGAGTTTACCGCCCCAAACACACCACAACAGAACGCCCCCGTCGAGAA TGCGATTTGGCGTTTGATGAAGGGCGGGACCGTGTGCCGCAGGAGCGCTG TCTTGGAGTTCGGCATCGACTACTCCGGCATCCCGAACATGGACTCCCGC GGGGATCGTCTCTGGTTGGAGTCGGTGCGATTTACGGCCGCGTGCTTTAA TCGCAGCGGCACCAAGGCCAACCCCGGCAACATGTCGCCGTACGAGGTCT TCACGGGCACCAAGCCGGACGCCATCATCGTGCCGTTTCTGCAACCGCTC ATTATGCGGAAGCAGAGGGTGATCAAGCTCGACGACCAGGGCGAGCCTGG GTACTACCTCGGTCAGAGCCACCAACACGGGCGGTCCACGGTGCGGGTGC TCAAGGTGTCTACCGGGCGGCCATGCCACAGCAGGGACATCGTGTTCATT TCCGGCGCCGCCGCGTCTGCCGGGAAGGGGGAGAAGCTGGCGCCAGAGTT CCCGCCACGCAGCAGCGTCCGTCGTTCGGCCCAGCTCTGCCACCTCCATC GCCAGCACCGCCGTATACGCCGCCGTCCAACATTGCGCCGCCGCCGCTCG CCACGCTGCCGCCTACGCCGTCCTCGCAATCGCTCACGCTGTTGCCGGGG CCGCATGGCCGCATGCGGGCTTGCCGCCTGCGACGCTTCCGCTTACTCCG CCGTCACTCATGCCGCCCCCGCAGCCGCTTGCGCCGCTGCCCGGGGCCGC TGGGCCACGTGCGGGTTCGCCGATACCGGAGGAGACAACGCTTCCGCACT CAGCGGGGGTGTTGCCGCCTCTATCCAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:862363..864590+

>mRNA_C-linearis_contig10.459.1 ID=mRNA_C-linearis_contig10.459.1|Name=mRNA_C-linearis_contig10.459.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3510bp|location=Sequence derived from alignment at C-linearis_contig10:862363..864590+ (Chordaria linearis ClinC8C monoicous)
ATGCTTCCATCCACCGGCGATACCGGAGTTGGGCCAGAAAATGCCCCCGG
TGATATGCTTTCCACTTGCGCCGATGTAGTGCCTGACGTGTTTGGTTTCT
CGCCCATCGATGACGACGATGTAGTGCCCTGGAATAACTCCTCTGACGAA
CCGTTTTGCGGGGCGGAAGGGGAGAGGTTTCCGTCCGCTCTCGCGAGCGT
AGTACCTTCGACTGGCGTTTTTCCGCCCACAAACACGGGTGTAGTGACTT
TTCTCGACGGGAGTGTGATGCAAATCCCATACACGCTTGAGGGGTTGAGG
CTGGGTTCTGACGTGCTGAATATTTTTTTGGATGAGGGGGACATGGAATT
TGTGCCCAACGGCGACTACGGCGAATACGCCAATGGCCCTTTGTCTGACA
CAGCAGCTGCGCTTTTGTTGAGGGCTTTTGCTGCGATTGCCCCCAAACGT
CGACCTTTCCGTGTTGGCCCGACCACTAACGCTTTGGAGATAAATTATTT
CCACCGTTGCTCCGGCCACCTCTGCGAGTACCTGTTGAGGGAAACTGCAA
AACAACAGGGTATCAAGCTCACGGGGAGGTTGGAGACGTGCGTGCCGTGC
GTGTTGGTGAAGGGGGCGCGGGCTCACACCCCGAGGGCTGGCGGACGAGC
GAGCGAGCCGGGTGTTACGTACCACCTGGACCTCTGTGGCGCCGTGACCG
CGTCGCTCTGTGGCTGTATGTACTTGCTGGTGGTGGTGGACAGCTTCTCG
AGGTTCATGCTCGCGTACGGCCTGCGGCGGAAGTCGGCTGCGCTCGACGG
GTTCAAGGTGGCCATCACGGACCTCGCCAAGTACGGCCGCGGCGACATCC
AGACCATCCGCGTCGACATGGGCACCGAGTGGACCTCCGACCCGTTCCGC
ATGTTCTGCGCCAATGCTGGGATCCGCATGGAGTTTACCGCCCCAAACAC
ACCACAACAGAACGCCCCCGTCGAGAATGCGATTTGGCGTTTGATGAAGG
GCGGGACCGTGTGCCGCAGGAGCGCTGTCTTGGAGTTCGGCATCGACTAC
TCCGGCATCCCGAACATGGACTCCCGCGGGGATCGTCTCTGGTTGGAGTC
GGTGCGATTTACGGCCGCGTGCTTTAATCGCAGCGGCACCAAGGCCAACC
CCGGCAACATGTCGCCGTACGAGGTCTTCACGGGCACCAAGCCGGACGCC
ATCATCGTGCCGTTTCTGCAACCGCTCATTATGCGGAAGCAGAGGGTGAT
CAAGCTCGACGACCAGGGCGAGCCTGGGTACTACCTCGGTCAGAGCCACC
AACACGGGCGGTCCACGGTGCGGGTGCTCAAGGTGTCTACCGGGCGGCCA
TGCCACAGCAGGGACATCGTGTTCATTTCCGGCGCCGCCGCGTCTGCCGG
GAAGGGGGAGAAGCTGGCGCCAGAGTTCCCGCCACGCAGCAGCGTCCGTC
GTTCGGCCCAGCTCTGCCACCTCCATCGCCAGCACCGCCGTATACGCCGC
CGTCCAACATTGCGCCGCCGCCGCTCGCCACGCTGCCGCCTACGCCGTCC
TCGCAATCGCTCACGCTGTTGCCGGGGCCGCATGGCCGCATGCGGGCTTG
CCGCCTGCGACGCTTCCGCTTACTCCGCCGTCACTCATGCCGCCCCCGCA
GCCGCTTGCGCCGCTGCCCGGGGCCGCTGGGCCACGTGCGGGTTCGCCGA
TACCGGAGGAGACAACGCTTCCGCACTCAGCGGGGGTGTTGCCGCCTCTA
TCCAGATGCTTCCATCCACCGGCGATACCGGAGTTGGGCCAGAAAATGCC
CCCGGTGATATGCTTTCCACTTGCGCCGATGTAGTGCCTGACGTGTTTGG
TTTCTCGCCCATCGATGACGACGATGTAGTGCCCTGGAATAACTCCTCTG
ACGAACCGTTTTGCGGGGCGGAAGGGGAGAGGTTTCCGTCCGCTCTCGCG
AGCGTAGTACCTTCGACTGGCGTTTTTCCGCCCACAAACACGGGTGTAGT
GACTTTTCTCGACGGGAGTGTGATGCAAATCCCATACACGCTTGAGGGGT
TGAGGCTGGGTTCTGACGTGCTGAATATTTTTTTGGATGAGGGGGACATG
GAATTTGTGCCCAACGGCGACTACGGCGAATACGCCAATGGCCCTTTGTC
TGACACAGCAGCTGCGCTTTTGTTGAGGGCTTTTGCTGCGATTGCCCCCA
AACGTCGACCTTTCCGTGTTGGCCCGACCACTAACGCTTTGGAGATAAAT
TATTTCCACCGTTGCTCCGGCCACCTCTGCGAGTACCTGTTGAGGGAAAC
TGCAAAACAACAGGGTATCAAGCTCACGGGGAGGTTGGAGACGTGCGTGC
CGTGCGTGTTGGTGAAGGGGGCGCGGGCTCACACCCCGAGGGCTGGCGGA
CGAGCGAGCGAGCCGGGTGTTACGTACCACCTGGACCTCTGTGGCGCCGT
GACCGCGTCGCTCTGTGGCTGTATGTACTTGCTGGTGGTGGTGGACAGCT
TCTCGAGGTTCATGCTCGCGTACGGCCTGCGGCGGAAGTCGGCTGCGCTC
GACGGGTTCAAGGTGGCCATCACGGACCTCGCCAAGTACGGCCGCGGCGA
CATCCAGACCATCCGCGTCGACATGGGCACCGAGTGGACCTCCGACCCGT
TCCGCATGTTCTGCGCCAATGCTGGGATCCGCATGGAGTTTACCGCCCCA
AACACACCACAACAGAACGCCCCCGTCGAGAATGCGATTTGGCGTTTGAT
GAAGGGCGGGACCGTGTGCCGCAGGAGCGCTGTCTTGGAGTTCGGCATCG
ACTACTCCGGCATCCCGAACATGGACTCCCGCGGGGATCGTCTCTGGTTG
GAGTCGGTGCGATTTACGGCCGCGTGCTTTAATCGCAGCGGCACCAAGGC
CAACCCCGGCAACATGTCGCCGTACGAGGTCTTCACGGGCACCAAGCCGG
ACGCCATCATCGTGCCGTTTCTGCAACCGCTCATTATGCGGAAGCAGAGG
GTGATCAAGCTCGACGACCAGGGCGAGCCTGGGTACTACCTCGGTCAGAG
CCACCAACACGGGCGGTCCACGGTGCGGGTGCTCAAGGTGTCTACCGGGC
GGCCATGCCACAGCAGGGACATCGTGTTCATTTCCGGCGCCGCCGCGTCT
GCCGGGAAGGGGGAGAAGCTGGCGCCAGAGTTCCCGCCACGCAGCAGCGT
CCGTCGTTCGGCCCAGCTCTGCCACCTCCATCGCCAGCACCGCCGTATAC
GCCGCCGTCCAACATTGCGCCGCCGCCGCTCGCCACGCTGCCGCCTACGC
CGTCCTCGCAATCGCTCACGCTGTTGCCGGGGCCGCATGGCCGCATGCGG
GCTTGCCGCCTGCGACGCTTCCGCTTACTCCGCCGTCACTCATGCCGCCC
CCGCAGCCGCTTGCGCCGCTGCCCGGGGCCGCTGGGCCACGTGCGGGTTC
GCCGATACCGGAGGAGACAACGCTTCCGCACTCAGCGGGGGTGTTGCCGC
CTCTATCCAG
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