mRNA_C-linearis_contig10.450.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 336 bits (862), Expect = 3.130e-99 Identity = 179/379 (47.23%), Postives = 242/379 (63.85%), Query Frame = 3
Query: 2061 DLFVRTT-EECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIEGSL-QPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQAL--PGVGVSASGPGLVVCLPSSC 3185
D FV TT ++CH W SWP +QE +A G VL+F +F S+GNLFI + ++++ A +LEVA+ L +KFPGFR AFD A+IKWD+DPT ++Q + R + LK+ DG L+LS +L LA + + SL+E AV+ + +LR L+ + ++ P+ CAWN+ LRRSPSMI S+ A +PW + P+ P YVAWH+RTSDGE+ HSFNP+ H YI HGQSS +V P+FL+AT E CP F P+YISSNSK MARNC++ AE V G +DLG+ D HT +SKNP A A+ AFIDYLYLMD+ +I+++GSSFS TV ++K + CR+ P + V L VCLP C
Sbjct: 184 DRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKWDKFPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYP--LKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKER-WSSLRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTPSGFGPR----PKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKR----LNVCLPHDC 551
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 312 bits (799), Expect = 1.130e-92 Identity = 172/378 (45.50%), Postives = 234/378 (61.90%), Query Frame = 3
Query: 2076 TTEECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVD-PTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRG--ADFPNLRNLAPVVIEGS-LQPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCS----SGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
T ++C W+SWP +QE +A G V++F VF S+GN+F+++ +I++ A +LEVA++L+ ++F GFR AFDPA+IKWD+D PT++ Q R+ + + + DG ++LS +L +A K+ L G S+ E A+ + L L+ ++ PCAWN+ LRRSP+M+ S+ A +PW+ + P+ P KYVAWHIRTS GET SF P H YIFH QSS SV P+FL+AT E CP F TP+YISSNSK MARNC+ + AE V PG +DLG+ D HT +SKNP A A+ AFIDYLYLMD+ IIV++GSSFS TV IKGM C G+ L VCLP+ C
Sbjct: 4 TDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQRFEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYP---FTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEGYSKIGGLGRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTHEFNPR----PKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKN--LNVCLPADC 372
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 260 bits (665), Expect = 1.570e-71 Identity = 145/376 (38.56%), Postives = 226/376 (60.11%), Query Frame = 3
Query: 2085 ECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIE----GSLQ-----PDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
EC E W +WP +QE +A G V++F + + +GN F+ + +I+Q+A LE+ +V++ + F GFR AFD +KWD+D + + + FH + ++ DG ++L D +L +LA+K VG ++ A L+ + PV I G LQ PC WN+F+RRS +M++ + A +PW +G KY+A+ IRT++GET SF+P+ H YIF+ S V + AAT+ + CP+AF E D P++ISSNS MARNCS+ A + ++PGL+D+G+ D HT +S +P AA+ AF+D+L+++DA+++VR+ SSFSGT V++KGM C +A V + SG L VC+P+ C
Sbjct: 222 ECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVINWKGFQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFH--LFRFYDGFMVLCDHQLTMLASK---VGIAIQHP-----DAMMLQLKKVFPVKIRYWISGGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPW-RVEGSSMSRFQ--KYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISG--LYVCVPAGC 582
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.890e-67 Identity = 139/321 (43.30%), Postives = 196/321 (61.06%), Query Frame = 3
Query: 2223 MLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIEGSLQPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
MLEVA++++ ++FP FRVAF+P IKWD+D T +L ++ +A +H L++ DG L++SD +L +++ VG+ + A F N L P PCAWN+ LRRSP+M+ SM A +PWV A P+ H Y AWHIRTS+GET SF+ +R YIF+ +S+S+ P+F++ + E+ CPS F G +D+P+YISSNSK ARNCS+ ++ + +DLG+ D HTA+SKNP V AFID+LYLMDADIIVR+ SSFSG ++ IK C A G + L VC+P+ C
Sbjct: 1 MLEVALIINLDQFPAFRVAFEPEVIKWDLD-TEPFKLRGGEISKGVDAE-DRHALQFLDGFLIVSDHQLEVMSASFG-VGSGTHSGIKAGFRKAFKNRWRHYLATANLDLAP-PCAWNMVLRRSPTMMNSMEAHTPWVTAGDSPRAHAH---YHAWHIRTSEGETERSFSKQR--YIFNNVASQSICPMFVSTREASEEACPSRFSG--NDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPDTV-VNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLGK-LPVFRMHLFVCVPADC 308
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.060e-57 Identity = 105/207 (50.72%), Postives = 136/207 (65.70%), Query Frame = 3
Query: 2565 CAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
CAWN+ LRRS S++ S+ A +PW A P +YVAWHIRTS+GET SF+P+ H+YIF+GQ+S +VFP+FL+AT E CP + P+YISSNSK M+RNC++ AE + G +DLG+ +D HT YS NP A A+ AFIDYLYLMD+ IIV++GSSF+ TV IKG CR A G L +CLP+ C
Sbjct: 19 CAWNMLLRRSHSIMASLDANNPWTPAGF----GSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRS--LYICLPNDC 219
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI) HSP 1 Score: 162 bits (411), Expect = 1.720e-38 Identity = 101/286 (35.31%), Postives = 160/286 (55.94%), Query Frame = 3
Query: 2085 ECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFP--NLRNLAPVVIE----GSLQ-----PDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSS 2909
EC E W +WP +QE +A G V++F + + +GN F+ + +I+Q+A LE+ +V++ + F GFR AFD +KWD+D T + +A ++ N H+ + DG ++L D +L +LA+K+ + A++ D L+ + PV I G LQ PC WN+F++RS SM++S+ +PW +G KYVA+ IRT++GET SF+P+ H YIF+ S V + AT+ + CP+AF E D P++ISSNS + R+ S
Sbjct: 222 ECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVNWKGFQGFRDAFDTGELKWDID-TEPFRRRAKAISRGVNPSGF-HLFWFYDGFMVLCDHQLTMLASKMGI----------AIQHPDAMVLQLKKVFPVKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPW-RVEGSSMSRFQ--KYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRHSCS 492
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.710e-24 Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 3
Query: 2562 PCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSN 2879
PCAWN+ LRRSP+M+ SM A +PWV P+ H Y AWHIRTS+GET SF+ +R YIF+ +SES+ P+F++ + E+ CPS F G D+P+YISSN
Sbjct: 41 PCAWNMVLRRSPTMMNSMEAHTPWVTVGDSPRTRAH---YHAWHIRTSEGETERSFSKQR--YIFNNVASESICPMFVSTREASEEACPSRFSG--KDSPVYISSN 139 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.450.1 >prot_C-linearis_contig10.450.1 ID=prot_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=454bp MRQRRTFLLLLAALPAFFGTAAQDSGGDIDLERRAGTDKSLRALRHGTTPback to top mRNA from alignment at C-linearis_contig10:413104..420429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.450.1 ID=mRNA_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7326bp|location=Sequence derived from alignment at C-linearis_contig10:413104..420429+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:413104..420429+ >mRNA_C-linearis_contig10.450.1 ID=mRNA_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2724bp|location=Sequence derived from alignment at C-linearis_contig10:413104..420429+ (Chordaria linearis ClinC8C monoicous)back to top |