mRNA_C-linearis_contig10.443.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.443.1
Unique NamemRNA_C-linearis_contig10.443.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 1.940e-103
Identity = 203/260 (78.08%), Postives = 217/260 (83.46%), Query Frame = 3
Query: 1683 ALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAA--AQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNNAAAAKKG 2456
            + + DFINRWGDGR+IL Y EG RRQP GFKP QVLATALDPRTKILYGV+++EKADVWKLV+EEAVKIAVE+RN E +Q AS     XXXXXXXXXXXXXXXXXXXXXXXXXXX      AQAVG A   +L EGADSS   LIT+ VR EL AFK S G KMY  DKEG  +YLDPLDWWRVRC DFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTT+ELLVLLRHSWKIVEEWE SN  AAAK+G
Sbjct:   46 STQPDFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAKRG 305          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 9.410e-88
Identity = 193/449 (42.98%), Postives = 246/449 (54.79%), Query Frame = 3
Query: 1098 CEPSMVKMGRLPE-EGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNT-ARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGT---TLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEAS 2429
            CEPSM+K GRL E +G   +HI C NHR+ESTT+ VFNG  +   + LAR +V RY  SSQ A RL Q     L  E   V+QDV TRWWST +MV RLL L  AI  HE+ D++ PLLS  +  VL+LI PIL PF   Q  LE   Y TG   +  + +LR  LE A+ DL  +      +    A  AV P   AL  DF NRWGDG +IL Y EG RRQP+GFK  QV ATALDPR K LYG++  E A VW+ V   AV IA+     +KA  ++                                  AAA              AD     L+   V  E+ AFKA+ G +++ + K  T    ++ +PLD WR +  ++P LA LARRVLAIP++QA+SER+FS AG  VT  R+ L    +ELLV LR+ W +V+EW+ S
Sbjct:  113 CEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFE--AAAAXXXXXXXXXXXXXSADEKREQLVAI-VDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.290e-83
Identity = 166/279 (59.50%), Postives = 184/279 (65.95%), Query Frame = 3
Query: 1098 CEPSMVKMGRL-PEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGAS 1931
            CEPSMVKMGRL   +  V T I CCN+RLEST++IVFNGP VKKVM LARG+VTRY TSSQAADRLKQFVKTYLG +NKRVIQDV T                                                                G  VVPFIYDLRNSLEDA++DL ELPP SDA+VNTA AAVMPC+ ALRDD+I+RWGDG +IL Y EG RRQP GFKP  VLATALDPRTKI YGV+++EKADVWKLVQEEAVKIAVE+RN E +Q  S
Sbjct:  113 CEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT----------------------------------------------------------------GSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQRTS 327          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 3.420e-82
Identity = 178/407 (43.73%), Postives = 220/407 (54.05%), Query Frame = 3
Query: 1098 CEPSMVKMGRLPEEGDV-CTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSS-DADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERL 2312
            CEPSMVK GRL E G     HI C NHR+ESTT+ VFNG  +   +A AR VV RY  SSQ + RL  F+   L      V+QDV TRWWS+ +M+ RLL L  AI  HE+ D + P+LS  +  VL+LI PIL PF   Q  LE   Y TG   VP I +LRN LE A+ DL         A    A  AV+P   AL +DF+NRWGDG  IL Y EG RRQP+GFK  QV ATA+DPR K LYG+   E A VW+ V  +AV IA E  + +    +                                 F AAA A   A A   G          + + V  E+ +F+ + G  ++    +G  +Y DPLDWWR R  +FPHLA LARRVLAIP++QA SER+
Sbjct:  149 CEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSA----FEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 4.810e-82
Identity = 215/468 (45.94%), Postives = 284/468 (60.68%), Query Frame = 3
Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFM-----------AAAQAVGDAPAQEL---------------GEGADSSTTSLITNPVRAELE--------AFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHS 2399
            CE SMVK GRL EE +  TH+ C  HRLES T+  F GPGV K +ALARGVVTRY+ SSQA+DRL+Q V   +  E K V+QDV TRWWST   + RL+ L+  I +HE  D   PLL   +  VL+L+  +L+PF   Q  LE+    T   V P+I DL++ L++A+E L      +++ V  A+  V+ C  AL+ D   RWGD  D+L Y EG RRQPRGFK  QVLATAL PR+K LYG+E+ E +DVW     EAVK+A+E++  E      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             A++  +   PA                    G    + +  ++P+R ++E        AFK + G  +   +++G  +   PL+WWRV+  ++P LA+LARRVL IPA QA+SER+FS AG +VTK R  + P  + L+V LR++
Sbjct:   78 CELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAV-SWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 1.640e-65
Identity = 157/446 (35.20%), Postives = 223/446 (50.00%), Query Frame = 3
Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNN 2435
            CEPSMVK GRL EE +  TH+ C  HRLES T+  F GPGV K +ALAR VVTRY+ SSQA+DRL+Q ++  +  E K+V+QDV TRWWST + + RLL L+  I +HE  D + PLL   +  VL+++ P+ +PF  +Q   E+    T   V+P+I DLR+ L++A+E L      +++ V  A+  V          F  +      ++        +PRGFK  QVLATALDPR+K LYG+E+ E +DVW+ V  EAVK+A+E++  E  Q A                                   A++  +   PA                     +  A  A  G K    +   +T                        RVL IPA+Q +SER+FS AG +VTK R  + P  +EL++ LR+  + V+ W  + N
Sbjct:  122 CEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVF---------FAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAG----------------------------------ASSSLIPVEPAAXX----------XXXXXXXXDFAAASAVPGDKQQSANASSST-----------------------SRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWNGNGN 483          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.950e-65
Identity = 128/277 (46.21%), Postives = 170/277 (61.37%), Query Frame = 3
Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGA 1928
            CEP MVK GRL EE +  +H+ C  HR ES T+  F GPGV K +AL RGVVTRY+ SSQA++RL+Q     +  E K+V+QDV TRWWST   +                D + PLL+  +  VL+L+ P+L PF   Q  LE+    T   V  +I DLR+ L++A+E L      +++ V  A+  ++ C  AL+ D   RW DG D+L Y EG RRQPRGFK  QVLATALDPR+K LYG+E+ E +DVW+ V  EAVK+A+E++  E  Q A
Sbjct:   66 CEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWSTPREI----------------DSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSA 325          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.210e-46
Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 3
Query: 1608 DLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEE-AVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAA--AQAVGDAPAQELGEGADSST 2099
            DL ELPP SDA+VNTARAAVMPC+ ALRDDFINRWGDGR+IL Y EG RRQP GFKP QVLATALDPRTKIL+GV+++EKADVWKLVQEE AVKIAVE+RN E +Q  S      XXXXXXXXXXXXXXXXXXXXXXXXXX      AQAVG A   +LGEGADSST
Sbjct:  143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENSQRTSSQQGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLGEGADSST 309          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 8.650e-34
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 3
Query: 2235 TDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNNAAAAKKG 2456
            TDFPHLANLARRVLAIPATQA+SERLFSCAGNIVTKNRNNLAPTT+ELLVLLRHSWKIVEEWE SN  AAA +G
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAMRG 225          
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5L057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L057_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.020e-29
Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 3
Query:  369 SKPTGAFAYSWTYFECYAKGHLKTSALCKLCLEQQEFDRAKIKYSQSPSNLIRHLNTDFPGHREAYDDCVSRKT--GKSPPTSSRAGEALGAASGSKASPTGIESYFGKDTSG 701
            SKP+GA AY+W YFE Y KG+ K  A+CKLC+EQ+EF R KIKYSQSPSN++ HL+TDF GH+ A++DC S +T  G+S P S+ AG A GA SG KAS  GI+SYF KDT+G
Sbjct:  264 SKPSGASAYAWRYFEGYVKGNFKAFAVCKLCMEQKEFGREKIKYSQSPSNMLSHLHTDFAGHQAAFEDCTSSRTAAGRSLPVSA-AGAASGAISGPKAS-AGIDSYFIKDTAG 374          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.940e-10378.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI9.410e-8842.98Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE1.290e-8359.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUY5_9PHAE3.420e-8243.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE4.810e-8245.94Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE1.640e-6535.20Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE1.950e-6546.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE2.210e-4676.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPB0_9PHAE8.650e-3490.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L057_9PHAE1.020e-2961.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:272524..276430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue7e-44
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size3250
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.443.1prot_C-linearis_contig10.443.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 273312..274172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927327.9606864-UTR-C-linearis_contig10:272523..2733111622927327.9606864-UTR-C-linearis_contig10:272523..273311Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 272524..273311 -
1690879628.722597-UTR-C-linearis_contig10:272523..2733111690879628.722597-UTR-C-linearis_contig10:272523..273311Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 272524..273311 -
1622927327.9814672-UTR-C-linearis_contig10:274172..2750211622927327.9814672-UTR-C-linearis_contig10:274172..275021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 274173..275021 -
1690879628.747493-UTR-C-linearis_contig10:274172..2750211690879628.747493-UTR-C-linearis_contig10:274172..275021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 274173..275021 -
1622927327.994708-UTR-C-linearis_contig10:275678..2764301622927327.994708-UTR-C-linearis_contig10:275678..276430Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 275679..276430 -
1690879628.7562177-UTR-C-linearis_contig10:275678..2764301690879628.7562177-UTR-C-linearis_contig10:275678..276430Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 275679..276430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927327.9695163-CDS-C-linearis_contig10:273311..2741721622927327.9695163-CDS-C-linearis_contig10:273311..274172Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 273312..274172 -
1690879628.733648-CDS-C-linearis_contig10:273311..2741721690879628.733648-CDS-C-linearis_contig10:273311..274172Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 273312..274172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.443.1

>prot_C-linearis_contig10.443.1 ID=prot_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=287bp
MEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGN
RRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVES
RNEEKAQGASSQQRPEAAAAAASSTTSAGEEDSSRKRRGGGGFMAAAQAV
GDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLY
LDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRN
NLAPTTIELLVLLRHSWKIVEEWEASNNAAAAKKGY*
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mRNA from alignment at C-linearis_contig10:272524..276430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.443.1 ID=mRNA_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3907bp|location=Sequence derived from alignment at C-linearis_contig10:272524..276430- (Chordaria linearis ClinC8C monoicous)
CACAGCCGTATACAAGTGACATGGAGACTGCCAGCAGCTGTAGTTGGACG AGAGCTCACACACATCATCAGCAGATCGGCTGCTGTGATGCGTGGGCTAC ACTTACAGGATACGGTAGGGTTGGGTCTTGTGTACTGGAGACCGGGGCGC CAGTACTCCAGTACATACGCATCTCACGTACGCCCCTCAATACGCCTCAA GAACCAGCGGAAACCCACATATGCAGCCCGCCTCAAAAGGAGAGAGGAGA GAGAGAGAGAGAGAGACACACAGCACACCCCACACCAACCACATACGCGG CGGGATACCATAGAACGATGGACAGGTTTGTATCCTCTGCCAGCTCGTCT GCTGCAGACCCAGGCAGTTCGAAACCGACTGGGGCCTTTGCGTACAGCTG GACATATTTTGAGTGCTACGCCAAAGGGCACCTCAAAACGTCAGCCCTCT GTAAGCTGTGCTTGGAGCAGCAGGAGTTTGACCGAGCAAAGATCAAGTAC AGCCAGTCGCCATCAAACCTGATTAGGCACCTCAACACCGATTTTCCCGG CCATCGAGAGGCATACGACGACTGTGTAAGCCGCAAGACGGGGAAGTCAC CTCCTACGTCTTCCCGTGCGGGGGAGGCCTTGGGGGCGGCCAGCGGCTCC AAGGCTTCGCCGACGGGGATCGAGAGCTACTTCGGCAAAGACACCTCGGG CTGGCACCAACATCTGGTGCGATGGATGGTCATGAACGCCATTCCCTTCT TGGTGAGATATGCATGTGTGCGGATGTGTAGGGTATTTTGTTTCACATGT GTAGATGCAATTTTCAGTGTAGATTTTCATGTGTTTTTCCGGCGAGTATC GAGCGGTAATTCTGATGTTTGTAGTGTTCCATGTTTTCCCCCGACCCCGT CTAAACTCCAAAAGCTATACGGAGTAAAAAGCCACGTGCGATAAAAACAT GCCACGGGGCCTTTCGTAGGATTTTGTCTAATGCGCGGGCTTTTCAAAAG AAGGTGTGCAATGGTATCCACAAAGGTTTTGTGTTTGTGTGGGTGTGTGT GTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTAT TTTGAGCACCGCAACAATGATCGTATTGCCGCTGCCCAAGCATGACTCCA CTTCTTGTAGCAACGCGGTCTGTGACGGAGAAAGTTCCAAGTTGCCGCCG CTCCTCGCCTTGTTCACTTACGCCCCCCACGCATGGCAGAAAACAGAAAG TAGCTAGGTCGGCCTCTTGTTTTCTCACCGACGCCCATTTGTTTTTGTAT GTGCTAGCGCTACATCAGTACTCAATGATGCATTTTTCTGCTGCTTTTCG ACGTGACTGACCTCCCGAAATCCCCGCGTCCGCTTCTCGCTTCCCCTCTA AACTTACAGATGCTCGCGGATAAAAGCTTTTAAGAACATGGTGCACGCCA TCCACTCAAGTGCCCACATCCCAGAGAAGAAAGACTGCGTGACCACGATG CGTACTGTGAAGACGGTCATGATGGAGAAAGTATCAAGCATGATCAAGGG CGAGCACGTGTGCATCACCTCCGACGGCTGGACCTCTTGCGCCAACGACA CCTACATATCGCTTACGGTCACCCTGATCACCACCGCCTGGAAGCTGGAC TGCAGTAAATCGGAAGGAACGACGACAGGTGATGCTCTTGCTGCTGGTGT CACAGCCGCGGTGGCGAAGCATGGTCTGACTGGCAAGGTTACTGCGATTA CTAATGTGAGCCTTCTATGGTGAAGATGGGGCGCCTTCCCGAAGAAGGCG ACGTTTGCACCCACATCCGCTGCTGCAACCACCGGCTTGAAAGCACCACC GCCATCGTCTTCAACGGGCCGGGGGTCAAGAAGGTTATGGCCTTGGCCCG CGGCGTGGTAACGCGATACTCGACATCAAGCCAGGCGGCCGACAGGCTCA AGCAGTTTGTCAAGACTTACCTTGGTTTTGAAAACAAGCGGGTGATCCAG GACGTGGCAACCAGGTGGTGGTCCACATGCAGCATGGTAGCGCGACTGTT AGAGCTTAAGGTAGCAATCGACAAGCACGAGGCGGCGGACAAGCTGGACC CGCTGCTTTCGGCGGCAGAATAGACGGTGCTTAAGCTGATATTGCCTATC CTGGAACCGTTTGGGCACACCCAGACTTTGCTTGAGAGCCGAAACTATGA GACGGGTGGCTTCGTCGTACCCTTCATCTACGACCTCCGCAACAGCCTCG AAGACGCGATGGAAGACCTCAACGAGTTACCGCCCAGCTCGGACGCCGAC GTCAACACGGCGAGGGCGGCGGTGATGCCGTGCGTCATCGCGCTCCGAGA CGATTTCATCAACCGGTGGGGAGACGGACGCGACATCCTGACCTACGCGG AGGGCAACAGGCGCCAACCACGTGGTTTCAAGCCTGCCCAGGTGCTAGCA ACCGCACTTGACCCTCGCACGAAGATACTATATGGAGTGGAGGATAACGA GAAGGCCGACGTTTGGAAGCTCGTGCAGGAAGAGGCGGTGAAGATCGCCG TGGAAAGCCGCAATGAGGAAAAAGCTCAGGGTGCCTCGTCGCAGCAACGA CCGGAAGCAGCGGCAGCAGCGGCATCATCGACCACCAGTGCAGGCGAAGA GGACTCCTCGAGAAAGCGCCGTGGTGGGGGTGGGTTCATGGCGGCGGCGC AAGCGGTCGGAGACGCACCAGCCCAGGAGCTGGGCGAAGGCGCCGATAGC TCCACCACCAGCCTCATCACAAACCCGGTGCGGGCGGAGCTTGAAGCCTT CAAGGCGTCCCAAGGTAGCAAGATGTACCGGTTAGACAAGGAAGGCACAA CGTTGTACCTTGACCCCTTGGACTGGTGGCGGGTACGGTGCACAGACTTC CCGCACTTGGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCA GGCAGAGTCCGAGCGTCTGTTCTCCTGCGCTGGAAACATCGTCACCAAGA ATCGCAACAACTTGGCCCCGACCACCATCGAGCTGCTCGTTCTCCTGCGC CACTCGTGGAAGATAGTGGAGGAGTGGGAAGCATCCAACAACGCCGCAGC CGCGAAGAAGGGCTACTAATTTGTTTGGCTGTCTTAGGATTTCTGTTTTT TACTCTCCTGAAGGGTGCTGATAGCGAAAATAATCGCCATCCTAATACTC TGCTTGTTGTGCTGGTACATCGCGGCTGTAATTTGTGCGCGGTGCAGGTT TTGGTTGAGTAGCTTGAGCACCCTCGTGTTGTAGCGTTCTATCGAGCTGG TTCATTTGTTGCGCCCCTTTTCCTGGCTTTCCCCGTTGTTTTTGTTTTTC AGTTGACTGCTACTGTTTCCATAGCAGCACCTTGGCTCGTGGTTTCGTGG TATACGTTCAGGGCTGCCGTGTCGTTGTTTCTTTTGTTTCTTTTGTTTTT TTTGCGAGAGGCTGTTCAATAAACAAGAGTGCTGCCCACCACCTTGTGCC TTATACTTTCAACTGCTGATTGTATGGTTTTTTGCTTGGTTGCTTGCGTT ATTTCTACAACGCAGAGTAGTAGTCTTTTTCAATGCTTCAGTTTCTACGG ATTAGATACAACCATTCATTCTAACCATTTCAGCTCATGCGTATGCATAC GTCTTCCACGATCCTGGAGTTTATAGGCATTGCAAAGTTTAAAATGTGTG CCACATTTGCTCGTCTCGAAAACCAATAAATTTGCTGAAATTTGGGCGTC GTACTTCGGGTTTCTATCGTTTTCACCCCGATGATGCCTCTGTCAGGTGG GCCAAAATCACTTATTTTTGATGCTCTAGTAAAGTCAAATCGCGTAATAA CCAAGAACGTGTAACCCGGTCACAATATAACCATCTCCGGGTACAGAGGA AATCAAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:272524..276430-

>mRNA_C-linearis_contig10.443.1 ID=mRNA_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at C-linearis_contig10:272524..276430- (Chordaria linearis ClinC8C monoicous)
ATGGAAGACCTCAACGAGTTACCGCCCAGCTCGGACGCCGACGTCAACAC
GGCGAGGGCGGCGGTGATGCCGTGCGTCATCGCGCTCCGAGACGATTTCA
TCAACCGGTGGGGAGACGGACGCGACATCCTGACCTACGCGGAGGGCAAC
AGGCGCCAACCACGTGGTTTCAAGCCTGCCCAGGTGCTAGCAACCGCACT
TGACCCTCGCACGAAGATACTATATGGAGTGGAGGATAACGAGAAGGCCG
ACGTTTGGAAGCTCGTGCAGGAAGAGGCGGTGAAGATCGCCGTGGAAAGC
CGCAATGAGGAAAAAGCTCAGGGTGCCTCGTCGCAGCAACGACCGGAAGC
AGCGGCAGCAGCGGCATCATCGACCACCAGTGCAGGCGAAGAGGACTCCT
CGAGAAAGCGCCGTGGTGGGGGTGGGTTCATGGCGGCGGCGCAAGCGGTC
GGAGACGCACCAGCCCAGGAGCTGGGCGAAGGCGCCGATAGCTCCACCAC
CAGCCTCATCACAAACCCGGTGCGGGCGGAGCTTGAAGCCTTCAAGGCGT
CCCAAGGTAGCAAGATGTACCGGTTAGACAAGGAAGGCACAACGTTGTAC
CTTGACCCCTTGGACTGGTGGCGGGTACGGTGCACAGACTTCCCGCACTT
GGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGT
CCGAGCGTCTGTTCTCCTGCGCTGGAAACATCGTCACCAAGAATCGCAAC
AACTTGGCCCCGACCACCATCGAGCTGCTCGTTCTCCTGCGCCACTCGTG
GAAGATAGTGGAGGAGTGGGAAGCATCCAACAACGCCGCAGCCGCGAAGA
AGGGCTACTAAATGGAAGACCTCAACGAGTTACCGCCCAGCTCGGACGCC
GACGTCAACACGGCGAGGGCGGCGGTGATGCCGTGCGTCATCGCGCTCCG
AGACGATTTCATCAACCGGTGGGGAGACGGACGCGACATCCTGACCTACG
CGGAGGGCAACAGGCGCCAACCACGTGGTTTCAAGCCTGCCCAGGTGCTA
GCAACCGCACTTGACCCTCGCACGAAGATACTATATGGAGTGGAGGATAA
CGAGAAGGCCGACGTTTGGAAGCTCGTGCAGGAAGAGGCGGTGAAGATCG
CCGTGGAAAGCCGCAATGAGGAAAAAGCTCAGGGTGCCTCGTCGCAGCAA
CGACCGGAAGCAGCGGCAGCAGCGGCATCATCGACCACCAGTGCAGGCGA
AGAGGACTCCTCGAGAAAGCGCCGTGGTGGGGGTGGGTTCATGGCGGCGG
CGCAAGCGGTCGGAGACGCACCAGCCCAGGAGCTGGGCGAAGGCGCCGAT
AGCTCCACCACCAGCCTCATCACAAACCCGGTGCGGGCGGAGCTTGAAGC
CTTCAAGGCGTCCCAAGGTAGCAAGATGTACCGGTTAGACAAGGAAGGCA
CAACGTTGTACCTTGACCCCTTGGACTGGTGGCGGGTACGGTGCACAGAC
TTCCCGCACTTGGCCAACCTCGCCCGCCGTGTGCTGGCGATCCCCGCCAC
TCAGGCAGAGTCCGAGCGTCTGTTCTCCTGCGCTGGAAACATCGTCACCA
AGAATCGCAACAACTTGGCCCCGACCACCATCGAGCTGCTCGTTCTCCTG
CGCCACTCGTGGAAGATAGTGGAGGAGTGGGAAGCATCCAACAACGCCGC
AGCCGCGAAGAAGGGCTACTAA
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