prot_C-linearis_contig98.17124.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig98.17124.1
Unique Nameprot_C-linearis_contig98.17124.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length486
Homology
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.430e-91
Identity = 282/533 (52.91%), Postives = 313/533 (58.72%), Query Frame = 0
Query:    1 MADEDALFAEFMGEIKSTVVAEAGXXXXXXXXXXXXDGDASDTASVGDVNADNDEGAG-GKD-AETSKRKGQ-QASPCPAAKKLKFMGKVAAAAAPVKAGATAAVVSKKVSPKTTVAKGGVVXXXXXXXXXXXXXXXKAKGVNGSAAAGGDKQKSNGKGASPPVDSSPG------------EAAXXXXXXXXENGXXXKGNP-KEGXXXXEEKGNEDDSAI----------------------------DMVGFGGT-----VQXXXXXXXXXXXXXXXXXXXXXXXXXGVHMGMPPGMGGEGNMGMNXXXXXXGGYGVPPPG------------MSMGMNMXXXXXXXXXXXXXXXGQGPYPDGSMGMGYGYGGPINGMMPGQGGMDMGXXXXXXXXXXXXXXXXXXXXXXXXXA-----SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKE 467
            MADEDALFAEFMGEIKSTVVA               DG ASD ASVGDV AD+ EG G G++ A+T+KR+G+ +ASP PA KK +FMGK+ AAA PVKAGA AA  + + +     A+                      G  G+AAA   K+  +G GA    D+  G               XXXXXXXX +G   KG   K G XX  +KG ++ S                              +MVGFGG+      Q                         G+HMG PP  G  GNMGM        G+G                 M  G   XXXXXXXXXXXXX  G GPYPDGSMG  YGYGGP+NGMMPG G     XXXXXXXXXXXXXXXXXXXXX    A     SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKY +FAKA+IIREKWNKKSKGYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKE
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAE--TKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKAR---------------------TGDKGTAAA---KKDPDGSGA----DAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPP-PGMRGNMGMMGAGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMG--YGYGGPMNGMMPG-GXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKE 499          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 3.020e-89
Identity = 273/569 (47.98%), Postives = 308/569 (54.13%), Query Frame = 0
Query:    1 MADEDALFAEFMGEIKSTVVAEAGXXXXXXXXXXXXDGDASDTASVGDVNADNDEGAGG--KDAETSKRKGQQASPCPAAKKLKFMGKVAAAAAPVKAGATAAVVSKKVSPKTTVAKGGVVXXXXXXXXXXXXXXXKAKGVNGSAAAGGDKQKSNGKGAS---------------------PPVDSSPGEAAXXXXXXXXENGXXX-------KGNPKEGXXXXEEKGNEDDSAIDMVGFGGTV-----QXXXXXXXXXXXXXXXXXXXXXXXXXGVHMGMPPGMGGEGNMGMNXXXXXXGGYG-----------VPPPGMSMGMNMXXXXXXXXXXXXXXXGQGPYPDGSMGMGYGYGGPINGMMPGQGGMDM--------------------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXASSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEXXXXXXXXXXXXXALGLL 485
            M+DEDA+FAEFMGEIKSTVVA               DG ASD ASVGDV AD  EG G     A+T+KR+  +ASP PA KK +FMGK+ AAA PVKAGA AA  + + +     A                     + G  G+AAA   K+  +G GAS                     PP+  + G+  XXXXXXXX   XXX       +  P +G       G++DD   +MVGFGG+      +                         G+HMG PP  G  GNMG+        G+G               GM  G   XXXXXXXXXXXXXX G GPYPDGSMG  YGYGGP+N MM G GG+                                                XXXXXXXXX          SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKY +FAKA++IREKWNKKSKGYGFVSFLDGMDMLKALREQ GKYLGNRPMKISKS+WK+RDVKE     XXXXX   ALGLL
Sbjct:    1 MSDEDAIFAEFMGEIKSTVVAAE---TKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRRETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTARATGSGPKA---------------------STGDKGTAAA---KKDPDGSGASAXXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXXXXXXXXXXXXXXXXXSERTPADGGDANG-AGSKDDE--EMVGFGGSGGVAKHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPP-PGIRGNMGVMGAGNGMAGFGGDGYXXXXXXXXXXXGMPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMG--YGYGGPMNVMMSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.020e-49
Identity = 86/127 (67.72%), Postives = 100/127 (78.74%), Query Frame = 0
Query:  359 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEXXXXXXXXXXXXXALGLL 485
            KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  YA+F KA+++REK N KSKGYGFVSF DG DM++ALRE+NGKYLGNRPMKISKSSW +R++KE             ALGLL
Sbjct:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.070e-43
Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 0
Query:  355 ASSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKEXXXXXXXXXXXXXALGL 484
            A+  K  R A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KYA+FAKA+++R+K+  KSKGYGF SF+D  D  KALRE NGKY+GNRP+K+ KS W++RD+KE   XXXXXXX   ALGL
Sbjct:  169 ATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALGL 298          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A485L606_9STRA (Aste57867_16091 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L606_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.380e-42
Identity = 71/105 (67.62%), Postives = 90/105 (85.71%), Query Frame = 0
Query:  359 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDR 463
            KF RVA GK WED TL+EWP+ND+RLF GDLGNEVTDD LA AF +YATFA AR++R+K+  KSKG+GFVSF+DG+D +KALRE NGKY+G+RP+K++K  W++R
Sbjct:  188 KFLRVAAGKVWEDSTLSEWPDNDFRLFCGDLGNEVTDDLLAQAFSQYATFAMARVVRDKFTHKSKGFGFVSFMDGLDAMKALREMNGKYIGSRPVKMTKGKWQER 292          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A835W301_CHLIN (RRM domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W301_CHLIN)

HSP 1 Score: 160 bits (405), Expect = 6.220e-42
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 0
Query:  355 ASSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKE 467
            A      R AGG+ W D TL EWPEND+R+FVGD+GNEVTDD LA +F KY++FA+ARI+R+   KKSKGYGFVSFLDG D  KALRE NGKY+GNRP K+SKS+W++R V++
Sbjct:  160 AKKKALLRSAGGEKWVDPTLVEWPENDFRIFVGDIGNEVTDDLLAKSFSKYSSFARARIVRDPRTKKSKGYGFVSFLDGNDFAKALREMNGKYIGNRPCKLSKSNWEERTVRK 272          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.020e-42
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 0
Query:  355 ASSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVK 466
            +S  KF R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +Y++FA AR+IR+K   KSKGYGFVSF+DG+D +KA+RE NGKY+G+RP+KI+K  W++R ++
Sbjct:  157 SSDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLE 268          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)

HSP 1 Score: 160 bits (404), Expect = 7.610e-42
Identity = 74/110 (67.27%), Postives = 86/110 (78.18%), Query Frame = 0
Query:  356 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDV 465
            S  KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF  YA+FA A+++R+K   KSKGYGFVSFLD  D  KA+RE NGKY+GNRP+KISK  W+DR +
Sbjct:  157 SDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAI 266          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.280e-41
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 0
Query:  362 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKE 467
            R AGGK+WED+TL EWPEND+RLFVGDLG + T   L   FRKY +FAKARI R++   K + YGFVSFLDGMDM+KALREQNGKY GNRPMK+SKS+WK+RD  E
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSE 201          
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.590e-41
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 0
Query:  356 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGNRPMKISKSSWKDRDVKE 467
            +S +  R AGGK+W D++L  WPEND+RLFVG+LGNEVTD+ ++ AF  YA+ AKA++IREK++ KSKGYGFVSFLD  D  KALRE NGKY+GNRP K+ +S+WKDR +KE
Sbjct:   53 ASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKE 164          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJT5_ECTSI1.430e-9152.91Temporarily Assigned Gene name family member (Tag-... [more]
A0A6H5KAJ6_9PHAE3.020e-8947.98RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CHC6_9STRA3.020e-4967.72RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RJZ2_9STRA2.070e-4363.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485L606_9STRA5.380e-4267.62Aste57867_16091 protein n=1 Tax=Aphanomyces stella... [more]
A0A835W301_CHLIN6.220e-4264.60RRM domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A6G0XJI1_9STRA7.020e-4263.39RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
T0QBK6_SAPDV7.610e-4267.27RRM domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A7S1XX46_9STRA1.280e-4169.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3JN71_9STRA4.590e-4163.39Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 383..456
e-value: 1.5E-16
score: 71.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 384..454
e-value: 4.1E-15
score: 55.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 382..460
score: 15.579
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 376..482
e-value: 1.1E-19
score: 72.7
NoneNo IPR availablePANTHERPTHR13952:SF8RRM-CONTAINING PROTEIN-RELATEDcoord: 340..475
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 340..475
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 369..459

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:368691..374784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17124.1mRNA_C-linearis_contig98.17124.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig98 368516..375485 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig98.17124.1 ID=prot_C-linearis_contig98.17124.1|Name=mRNA_C-linearis_contig98.17124.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=486bp
MADEDALFAEFMGEIKSTVVAEAGAGAGAGAGAGADDGDASDTASVGDVN
ADNDEGAGGKDAETSKRKGQQASPCPAAKKLKFMGKVAAAAAPVKAGATA
AVVSKKVSPKTTVAKGGVVAASATAAASAASSSGKAKGVNGSAAAGGDKQ
KSNGKGASPPVDSSPGEAAAAEAAAAGENGSGGKGNPKEGEGEGEEKGNE
DDSAIDMVGFGGTVQQQKVGGGGGGMPPGNNNSNSSNNNNGVHMGMPPGM
GGEGNMGMNGMGGFGGGYGVPPPGMSMGMNMGMGMPPGMGMPPGMGGQGP
YPDGSMGMGYGYGGPINGMMPGQGGMDMGMGAAGAAAAAAAAAGGKEKVA
KAKAASSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAG
AFRKYATFAKARIIREKWNKKSKGYGFVSFLDGMDMLKALREQNGKYLGN
RPMKISKSSWKDRDVKEVKKKAKKAKKVKKALGLL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf