prot_C-linearis_contig93.16897.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig93.16897.1
Unique Nameprot_C-linearis_contig93.16897.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length114
Homology
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BLAST of mRNA_C-linearis_contig93.16897.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.810e-10
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0 
Query:   57 GSGGPSGAAVPVVEIPEIPQSLPEYDEAETQAAVDFGERLCLKSASDWADIQKRDKT 113
            GSGG   AA P+ +IP     L EYDE +TQAA++FGE+LC K+ASDWADIQ+ D T
Sbjct:  350 GSGGRGPAAPPLPQIP-----LQEYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDT 401
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16897.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWR4_9PHAE4.810e-1059.65Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:142608..142949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16897.1mRNA_C-linearis_contig93.16897.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig93 142608..142951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig93.16897.1 ID=prot_C-linearis_contig93.16897.1|Name=mRNA_C-linearis_contig93.16897.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
GGSVNVSGGRSRGANASANVSGGRGRDAGGSVNVSGGRGRGAGGSVNVSG
GIGGGSGSGGPSGAAVPVVEIPEIPQSLPEYDEAETQAAVDFGERLCLKS
ASDWADIQKRDKTT
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