mRNA_C-linearis_contig93.16897.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16897.1
Unique NamemRNA_C-linearis_contig93.16897.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16897.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.810e-10
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  169 GSGGPSGAAVPVVEIPEIPQSLPEYDEAETQAAVDFGERLCLKSASDWADIQKRDKT 339
            GSGG   AA P+ +IP     L EYDE +TQAA++FGE+LC K+ASDWADIQ+ D T
Sbjct:  350 GSGGRGPAAPPLPQIP-----LQEYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDT 401
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWR4_9PHAE4.810e-1059.65Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:142608..142951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.6183786-CDS-C-linearis_contig93:142607..1429491622930796.6183786-CDS-C-linearis_contig93:142607..142949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 142608..142949 +
1690881254.871658-CDS-C-linearis_contig93:142607..1429491690881254.871658-CDS-C-linearis_contig93:142607..142949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 142608..142949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16897.1prot_C-linearis_contig93.16897.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 142608..142949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16897.1

>prot_C-linearis_contig93.16897.1 ID=prot_C-linearis_contig93.16897.1|Name=mRNA_C-linearis_contig93.16897.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
GGSVNVSGGRSRGANASANVSGGRGRDAGGSVNVSGGRGRGAGGSVNVSG
GIGGGSGSGGPSGAAVPVVEIPEIPQSLPEYDEAETQAAVDFGERLCLKS
ASDWADIQKRDKTT
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mRNA from alignment at C-linearis_contig93:142608..142951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16897.1 ID=mRNA_C-linearis_contig93.16897.1|Name=mRNA_C-linearis_contig93.16897.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=344bp|location=Sequence derived from alignment at C-linearis_contig93:142608..142951+ (Chordaria linearis ClinC8C monoicous)
GGTGGAAGTGTCAATGTTTCTGGTGGTAGAAGCAGGGGCGCAAATGCTAG
TGCCAATGTTTCTGGTGGCAGAGGCAGGGACGCAGGTGGAAGCGTTAATG
TTTCTGGTGGTAGGGGCAGGGGCGCAGGTGGTAGCGTCAATGTCTCAGGT
GGAATAGGTGGAGGAAGTGGTTCTGGTGGACCTAGTGGTGCTGCTGTGCC
GGTTGTGGAAATACCCGAAATACCTCAGTCATTGCCGGAGTATGATGAAG
CAGAAACTCAAGCAGCGGTAGACTTTGGAGAACGGTTGTGTTTAAAATCG
GCGAGTGATTGGGCAGATATACAAAAGAGAGACAAGACTACTAG
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Coding sequence (CDS) from alignment at C-linearis_contig93:142608..142951+

>mRNA_C-linearis_contig93.16897.1 ID=mRNA_C-linearis_contig93.16897.1|Name=mRNA_C-linearis_contig93.16897.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig93:142608..142951+ (Chordaria linearis ClinC8C monoicous)
GGTGGAAGTGTCAATGTTTCTGGTGGTAGAAGCAGGGGCGCAAATGCTAG
TGCCAATGTTTCTGGTGGCAGAGGCAGGGACGCAGGTGGAAGCGTTAATG
TTTCTGGTGGTAGGGGCAGGGGCGCAGGTGGTAGCGTCAATGTCTCAGGT
GGAATAGGTGGAGGAAGTGGTTCTGGTGGACCTAGTGGTGCTGCTGTGCC
GGTTGTGGAAATACCCGAAATACCTCAGTCATTGCCGGAGTATGATGAAG
CAGAAACTCAAGCAGCGGTAGACTTTGGAGAACGGTTGTGTTTAAAATCG
GCGAGTGATTGGGCAGATATACAAAAGAGAGACAAGACTACTGGTGGAAG
TGTCAATGTTTCTGGTGGTAGAAGCAGGGGCGCAAATGCTAGTGCCAATG
TTTCTGGTGGCAGAGGCAGGGACGCAGGTGGAAGCGTTAATGTTTCTGGT
GGTAGGGGCAGGGGCGCAGGTGGTAGCGTCAATGTCTCAGGTGGAATAGG
TGGAGGAAGTGGTTCTGGTGGACCTAGTGGTGCTGCTGTGCCGGTTGTGG
AAATACCCGAAATACCTCAGTCATTGCCGGAGTATGATGAAGCAGAAACT
CAAGCAGCGGTAGACTTTGGAGAACGGTTGTGTTTAAAATCGGCGAGTGA
TTGGGCAGATATACAAAAGAGAGACAAGACTACT
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