prot_C-linearis_contig93.16896.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig93.16896.1
Unique Nameprot_C-linearis_contig93.16896.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length195
Homology
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BLAST of mRNA_C-linearis_contig93.16896.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.210e-46
Identity = 89/193 (46.11%), Postives = 119/193 (61.66%), Query Frame = 0 
Query:    1 MGIVKLSPKLKVLCGLQANLE-TDKNLELVIDGGFLLHKCASRGDAAEKLVLNNDVNGIARQCAREIERFEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLL 192
            MGI+ LS   K +  L  NL+  + +  +++DGGFLLH+C +R  AA  L+L++DV  + ++CA E+ RFE RG  V +V DG  PPAK  T + RR  RE    +AR L    G + +++K  + AC F  R VAR+ATLLRP I G +  AP EADPQI + ++     G  V VY NDSDL VLGVR LL
Sbjct:    1 MGILSLSKHAKSVGSLSVNLQHAEHDDRIIVDGGFLLHRCCTRRTAARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLL 193
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE1.210e-4646.11Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..195
NoneNo IPR availableGENE3D3.40.50.1010coord: 1..195
e-value: 2.0E-23
score: 84.8
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081FLAP ENDONUCLEASE FAMILY MEMBERcoord: 1..194
IPR032641Exonuclease 1PANTHERPTHR11081:SF8EXONUCLEASE 1coord: 1..194
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 1..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:109698..110282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16896.1mRNA_C-linearis_contig93.16896.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig93 109698..110282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig93.16896.1 ID=prot_C-linearis_contig93.16896.1|Name=mRNA_C-linearis_contig93.16896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=195bp
MGIVKLSPKLKVLCGLQANLETDKNLELVIDGGFLLHKCASRGDAAEKLV
LNNDVNGIARQCAREIERFEKRGLAVWLVFDGCPPPAKGCTGDGRRETRE
GYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIM
TAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLLHKI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006084XPG/Rad2
IPR032641Exo1
IPR029060PIN-like_dom_sf