prot_C-linearis_contig92.16870.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig92.16870.1
Unique Nameprot_C-linearis_contig92.16870.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length412
Homology
[Close]
BLAST of mRNA_C-linearis_contig92.16870.1 vs. uniprot
Match: A0A6H5L3V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V8_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 5.410e-94
Identity = 178/314 (56.69%), Postives = 209/314 (66.56%), Query Frame = 0 
Query:    1 MAKWMGIEVPFWLIVAIGLGLVLLVSLQTPSSSSPRSRRGNRGSNSKKGAEKEVPASDAAKEVAKMLGVSVGGAVATGRARRRVPVTVCVNDVVLRRSGSKDGEWVAIDSAVKALALLNEVAAVFLVAWVESDLEESVVKDVAISSGLISPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGIAEHRLLLCSSHIGQVAVVRQLAPSLHIGGSIGLLEGIYRFVPSLVRIDPSAVALPADAHYADAAMSPVPPTSEEKXXXXXXXXXXXXXXXXXRNNGRDGGYKLEWREFTSLAAAAGLASETTADGKSKG 314
            M KWMG++VPFWLIVA+GLGLVLLV +Q PSSS+  SR  NR + +K+G  +E PASDAA+ V K LG+  GGAV  G +RRRVPVTVCVNDVVLR+    DG+WVAI+SAV+ LALLNEVA+VFLVAWV+SDL+ES+VKD+A+SSGL  P                               TGI EHRLL CSSHIGQVAVVRQL PSLHIGG I LLEGI RFVPSL+RIDPSAV  P +       +SP  P+ +E                      RDGGY LEWREF SLAAAAGL  E+ A G+++G
Sbjct:    1 MTKWMGLDVPFWLIVAVGLGLVLLVIVQAPSSSNSGSRHPNRSAKNKRGKAEEPPASDAARGVGKRLGI--GGAVRAGGSRRRVPVTVCVNDVVLRKG--PDGDWVAIESAVRVLALLNEVASVFLVAWVQSDLDESLVKDIALSSGLTGPSGRDTSDPSAALTANA---------------TGIPEHRLLFCSSHIGQVAVVRQLTPSLHIGGPIALLEGICRFVPSLLRIDPSAVDPPPET-----TVSPTAPSEKETGR-------------------RDGGYALEWREFKSLAAAAGL--ESAAGGEAQG 269
[Close]
BLAST of mRNA_C-linearis_contig92.16870.1 vs. uniprot
Match: D8LJE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE1_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.600e-55
Identity = 118/224 (52.68%), Postives = 136/224 (60.71%), Query Frame = 0 
Query:   93 VVLRRSGSKDGEWVAIDSAVKALALLNEVAAVFLVAWVESDLEESVVKDVAISSGLISPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGIAEHRLLLCSSHIGQVAVVRQLAPSLHIGGSIGLLEGIYRFVPSLVRIDPSAVALPADAHYADAAMSPVPPTSEEKXXXXXXXXXXXXXXXXXRNNGRDGGYKLEWREFTSLAAAAGLASETTADGKSKGNN 316
            VVLR+   +DG+WVAI+SAV+ L LLNEVA+VFLVAWV+SDL+ES+VKD+A+SSGL  P                               TGI EHRLL CSSHIGQVAVVRQL PSLHIGG I LLEGI RFVPSL+RIDPSAV  P +A  + AA    PP  E                       RDGGY LEWREF SLAAAAGL S T  + +  G++
Sbjct:    3 VVLRKG--RDGDWVAIESAVRVLVLLNEVASVFLVAWVQSDLDESLVKDIALSSGLTGPSGRDTSGPSATVAANA---------------TGIPEHRLLFCSSHIGQVAVVRQLTPSLHIGGPIALLEGICRFVPSLLRIDPSAVEPPPEATASPAA----PPEKE--------------------TGRRDGGYALEWREFRSLAAAAGLESATGGEAQGAGSS 185
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V8_9PHAE5.410e-9456.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJE1_ECTSI2.600e-5552.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34126:SF1coord: 183..263
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..411
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR037485Peroxisome biogenesis protein 22PANTHERPTHR34126FAMILY NOT NAMEDcoord: 183..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:264506..268678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16870.1mRNA_C-linearis_contig92.16870.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig92 264423..268736 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig92.16870.1 ID=prot_C-linearis_contig92.16870.1|Name=mRNA_C-linearis_contig92.16870.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=412bp
MAKWMGIEVPFWLIVAIGLGLVLLVSLQTPSSSSPRSRRGNRGSNSKKGA
EKEVPASDAAKEVAKMLGVSVGGAVATGRARRRVPVTVCVNDVVLRRSGS
KDGEWVAIDSAVKALALLNEVAAVFLVAWVESDLEESVVKDVAISSGLIS
PPSSPSASPPAKPDTSTKPSAAPLAASLAGTATGIAEHRLLLCSSHIGQV
AVVRQLAPSLHIGGSIGLLEGIYRFVPSLVRIDPSAVALPADAHYADAAM
SPVPPTSEEKQASSSSTSSTSSTSSSTRNNGRDGGYKLEWREFTSLAAAA
GLASETTADGKSKGNNDGGGSGDAEDTSTVEASTSTSTSETGAETLQPRP
LGEDAVSGSSNVNGGKVNGSAGVDGGKQTADSSAIADVNRSGSGSGSGSN
DERGGGSSSKM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037485PEX22