prot_C-linearis_contig92.16862.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig92.16862.1
Unique Nameprot_C-linearis_contig92.16862.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length83
Homology
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BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Match: D8LFG1_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.140e-31
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 0 
Query:    1 RPSARDTVNDLCEVLGANGSDIGSSTNDATA-GETSSSAGAIRLCKICWEAPIDTVLQECNHSVACTRCSQALLQSRQPLCPLC 83
            RPSA  TV DLCEVLGA+GS IGSS ND TA GE S SAGA R+CK+CWE PIDT+ + CNHSV CT CSQ LLQ RQP+CP+C
Sbjct:  252 RPSASVTVTDLCEVLGADGSGIGSSANDVTAAGENSRSAGASRVCKVCWERPIDTMFRPCNHSVLCTGCSQRLLQGRQPVCPIC 335
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BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Match: A0A336MC25_CULSO (CSON013349 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MC25_CULSO)

HSP 1 Score: 49.7 bits (117), Expect = 5.470e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0 
Query:   43 LCKICWEAPIDTVLQECNHSVACTRCSQALLQSRQPLCPLC 83
            LCKIC +API+ VL EC H VAC +CS+ L +     CP+C
Sbjct:  789 LCKICMDAPIECVLLECGHLVACVKCSKVLSE-----CPIC 824
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFG1_ECTSI1.140e-3171.43Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A336MC25_CULSO5.470e-553.66CSON013349 protein n=1 Tax=Culicoides sonorensis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 44..83
e-value: 0.0065
score: 25.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 44..83
score: 10.011
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 42..83
e-value: 1.1E-9
score: 38.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 40..83
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 19..83
e-value: 1.5E-10
score: 42.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:164379..164627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16862.1mRNA_C-linearis_contig92.16862.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig92 164379..164627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig92.16862.1 ID=prot_C-linearis_contig92.16862.1|Name=mRNA_C-linearis_contig92.16862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
RPSARDTVNDLCEVLGANGSDIGSSTNDATAGETSSSAGAIRLCKICWEA
PIDTVLQECNHSVACTRCSQALLQSRQPLCPLC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD