mRNA_C-linearis_contig92.16862.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16862.1
Unique NamemRNA_C-linearis_contig92.16862.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Match: D8LFG1_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.140e-31
Identity = 60/84 (71.43%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 RPSARDTVNDLCEVLGANGSDIGSSTNDATA-GETSSSAGAIRLCKICWEAPIDTVLQECNHSVACTRCSQALLQSRQPLCPLC 249
            RPSA  TV DLCEVLGA+GS IGSS ND TA GE S SAGA R+CK+CWE PIDT+ + CNHSV CT CSQ LLQ RQP+CP+C
Sbjct:  252 RPSASVTVTDLCEVLGADGSGIGSSANDVTAAGENSRSAGASRVCKVCWERPIDTMFRPCNHSVLCTGCSQRLLQGRQPVCPIC 335
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BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Match: A0A336MC25_CULSO (CSON013349 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MC25_CULSO)

HSP 1 Score: 49.7 bits (117), Expect = 5.470e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  127 LCKICWEAPIDTVLQECNHSVACTRCSQALLQSRQPLCPLC 249
            LCKIC +API+ VL EC H VAC +CS+ L +     CP+C
Sbjct:  789 LCKICMDAPIECVLLECGHLVACVKCSKVLSE-----CPIC 824
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFG1_ECTSI1.140e-3171.43Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A336MC25_CULSO5.470e-553.66CSON013349 protein n=1 Tax=Culicoides sonorensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:164379..164627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionserine/threonine protein kinase
Ec32 orthologEc-04_002300.2
Exons1
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.4064212-CDS-C-linearis_contig92:164378..1646271622930792.4064212-CDS-C-linearis_contig92:164378..164627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 164379..164627 +
1690881252.7898285-CDS-C-linearis_contig92:164378..1646271690881252.7898285-CDS-C-linearis_contig92:164378..164627Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 164379..164627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16862.1prot_C-linearis_contig92.16862.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 164379..164627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16862.1

>prot_C-linearis_contig92.16862.1 ID=prot_C-linearis_contig92.16862.1|Name=mRNA_C-linearis_contig92.16862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=83bp
RPSARDTVNDLCEVLGANGSDIGSSTNDATAGETSSSAGAIRLCKICWEA
PIDTVLQECNHSVACTRCSQALLQSRQPLCPLC
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mRNA from alignment at C-linearis_contig92:164379..164627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16862.1 ID=mRNA_C-linearis_contig92.16862.1|Name=mRNA_C-linearis_contig92.16862.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at C-linearis_contig92:164379..164627+ (Chordaria linearis ClinC8C monoicous)
CGTCCTTCAGCGCGGGACACCGTAAATGATCTCTGTGAGGTGCTCGGCGC
CAATGGAAGTGATATCGGGAGCTCGACAAATGACGCCACTGCAGGCGAGA
CTAGCAGCTCGGCAGGGGCTATTCGCCTGTGCAAAATATGTTGGGAAGCT
CCAATTGACACCGTGTTGCAGGAATGCAATCATAGCGTTGCGTGCACGCG
ATGTTCTCAGGCGCTTTTACAGAGCCGCCAACCACTCTGCCCGTTATGC
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Coding sequence (CDS) from alignment at C-linearis_contig92:164379..164627+

>mRNA_C-linearis_contig92.16862.1 ID=mRNA_C-linearis_contig92.16862.1|Name=mRNA_C-linearis_contig92.16862.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at C-linearis_contig92:164379..164627+ (Chordaria linearis ClinC8C monoicous)
CGTCCTTCAGCGCGGGACACCGTAAATGATCTCTGTGAGGTGCTCGGCGC
CAATGGAAGTGATATCGGGAGCTCGACAAATGACGCCACTGCAGGCGAGA
CTAGCAGCTCGGCAGGGGCTATTCGCCTGTGCAAAATATGTTGGGAAGCT
CCAATTGACACCGTGTTGCAGGAATGCAATCATAGCGTTGCGTGCACGCG
ATGTTCTCAGGCGCTTTTACAGAGCCGCCAACCACTCTGCCCGTTATGCC
GTCCTTCAGCGCGGGACACCGTAAATGATCTCTGTGAGGTGCTCGGCGCC
AATGGAAGTGATATCGGGAGCTCGACAAATGACGCCACTGCAGGCGAGAC
TAGCAGCTCGGCAGGGGCTATTCGCCTGTGCAAAATATGTTGGGAAGCTC
CAATTGACACCGTGTTGCAGGAATGCAATCATAGCGTTGCGTGCACGCGA
TGTTCTCAGGCGCTTTTACAGAGCCGCCAACCACTCTGCCCGTTATGC
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