prot_C-linearis_contig91.16828.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig91.16828.1
Unique Name	prot_C-linearis_contig91.16828.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	87

Homology

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A6H5L594_9PHAE (Ribosomal_L23eN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L594_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.940e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALE+ANKIGII
Sbjct:   59 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEVANKIGII 144

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A835Z6Z2_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.430e-42
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K RIIK+PLTTESAMKKIEDNNTLVFIVDVK+NKRQIK AV+ALY+I  Q VNTLIRPDG KKAYVRLTQD+DALE+ANKIGII
Sbjct:   63 MDKFRIIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKAAVRALYEISCQKVNTLIRPDGLKKAYVRLTQDYDALEVANKIGII 148

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A7S2STG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.190e-42
Identity = 70/86 (81.40%), Postives = 81/86 (94.19%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+KHRIIK+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAV  ++DI+ Q VNTLIRPDG+KKAYVRLTQD+DAL++AN+IGII
Sbjct:   71 MDKHRIIKYPLTTESAMKKIEDNNTLVFIVDVTANKRQIKDAVSQMHDIQCQKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 156

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A6U1J6R7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1J6R7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.440e-41
Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K+R+IK+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAVKA+Y+I    VNTLIRPDG+KKAYVRLTQD+DAL++AN+IGII
Sbjct:   55 MDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVAANKRQIKDAVKAMYEISCSKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 140

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: F0YN25_AURAN (60S ribosomal protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN25_AURAN)

HSP 1 Score: 138 bits (348), Expect = 4.640e-41
Identity = 68/86 (79.07%), Postives = 80/86 (93.02%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K+R+IK+PLTTESAMKKIEDNNTLVFIVDV +NKRQIKDAVK +Y+I    VNTLIRPDG+KKAYVRLTQD+DAL++AN+IGII
Sbjct:    1 MDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVLANKRQIKDAVKQMYEIACAKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 86

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A2D4BQZ7_PYTIN (60S ribosomal protein L23a putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQZ7_PYTIN)

HSP 1 Score: 136 bits (343), Expect = 1.740e-39
Identity = 66/86 (76.74%), Postives = 80/86 (93.02%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K+RIIK PLTTESAMKKIEDNNTLVF+VD+ +NKRQIKDA+K LYDI++  VNTLIRPDG+KKAYVRLT D+DAL++AN+IG+I
Sbjct:   63 MDKYRIIKSPLTTESAMKKIEDNNTLVFLVDILANKRQIKDAIKQLYDIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A3F2RWD3_9STRA (Ribosomal_L23eN domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWD3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.480e-39
Identity = 68/86 (79.07%), Postives = 79/86 (91.86%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K+RIIK PLTTESAMKKIEDNNTLVF+VD+ SNKRQIKDAVK LYDI+   VNTLIRPDG+KKAYVRLT D+DAL++AN+IG+I
Sbjct:   63 MDKYRIIKSPLTTESAMKKIEDNNTLVFLVDLLSNKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148

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BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A7S4QLV7_9DINO (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A7S4QLV7_9DINO)

HSP 1 Score: 136 bits (342), Expect = 2.550e-39
Identity = 66/86 (76.74%), Postives = 79/86 (91.86%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            M+K+R IK+PLTTESAMKKIEDNNTLVFIVD+ +NKRQIK+AV+ LY+I+   VNTL+RPDG KKAYVRLTQDFDAL++AN+IGII
Sbjct:   64 MDKYRTIKYPLTTESAMKKIEDNNTLVFIVDISANKRQIKEAVRQLYEIQCAKVNTLVRPDGLKKAYVRLTQDFDALDVANRIGII 149

[Close]

BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A1D2A5C7_AUXPR (Ribosomal_L23eN domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A5C7_AUXPR)

HSP 1 Score: 135 bits (340), Expect = 4.290e-39
Identity = 65/81 (80.25%), Postives = 77/81 (95.06%), Query Frame = 0

Query:    6 IIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            +IK+PLTTESAMKKIEDNNTLVFIVD++SNKRQI+DAV  LYDI+++ +NTLIRPDG+KKAYVRLT DFDAL++ANKIGII
Sbjct:   63 VIKYPLTTESAMKKIEDNNTLVFIVDIRSNKRQIRDAVARLYDIQTRKINTLIRPDGEKKAYVRLTPDFDALDVANKIGII 143

[Close]

BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Match: A0A8K1FMI1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMI1_PYTOL)

HSP 1 Score: 135 bits (339), Expect = 7.080e-39
Identity = 66/86 (76.74%), Postives = 80/86 (93.02%), Query Frame = 0

Query:    1 MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII 86
            ++K+RIIK PLTTESAMKKIEDNNTLVF+VD+ +NKRQIKDAVK LYDI++  VNTLIRPDG+KKAYVRLT D+DAL++AN+IG+I
Sbjct:   63 LDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot

BLAST of mRNA_C-linearis_contig91.16828.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L594_9PHAE	2.940e-51	98.84	Ribosomal_L23eN domain-containing protein n=2 Tax=...	[more]
A0A835Z6Z2_9STRA	6.430e-42	84.88	Ribosomal protein L23/L15e core domain-containing ...	[more]
A0A7S2STG4_9STRA	8.190e-42	81.40	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A6U1J6R7_9STRA	1.440e-41	80.23	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
F0YN25_AURAN	4.640e-41	79.07	60S ribosomal protein n=1 Tax=Aureococcus anophage...	[more]
A0A2D4BQZ7_PYTIN	1.740e-39	76.74	60S ribosomal protein L23a putative n=1 Tax=Pythiu...	[more]
A0A3F2RWD3_9STRA	2.480e-39	79.07	Ribosomal_L23eN domain-containing protein n=2 Tax=...	[more]
A0A7S4QLV7_9DINO	2.550e-39	76.74	Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep...	[more]
A0A1D2A5C7_AUXPR	4.290e-39	80.25	Ribosomal_L23eN domain-containing protein n=1 Tax=...	[more]
A0A8K1FMI1_PYTOL	7.080e-39	76.74	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..86 e-value: 5.0E-44 score: 151.3
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 6..66 e-value: 1.2E-14 score: 54.5
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 6..86 score: 21.816
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 10..86 e-value: 1.1E-28 score: 97.4
None	No IPR available	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 3..84
None	No IPR available	PANTHER	PTHR11620:SF64		coord: 3..84
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 64..79
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 5..78

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig91	contig	C-linearis_contig91:441324..442054 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig91.16828.1	mRNA_C-linearis_contig91.16828.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig91 440609..444160 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig91.16828.1 ID=prot_C-linearis_contig91.16828.1|Name=mRNA_C-linearis_contig91.16828.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIE
SQNVNTLIRPDGKKKAYVRLTQDFDALEIANKIGII*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR013025	Ribosomal_L25/23
IPR019985	Ribosomal_L23
IPR001014	Ribosomal_L23/L25_CS
IPR012678	Ribosomal_L23/L15e_core_dom_sf