prot_C-linearis_contig91.16815.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig91.16815.1
Unique Nameprot_C-linearis_contig91.16815.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length254
Homology
BLAST of mRNA_C-linearis_contig91.16815.1 vs. uniprot
Match: D8LKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.510e-33
Identity = 92/252 (36.51%), Postives = 128/252 (50.79%), Query Frame = 0
Query:    8 PAYAPVGGKFDQGRPVGIPLHQQRDARGVVP-QRNRRKEWWWQPGPVDSFWYCFPVSCGVVYGASCNVIVEVLLLSST-IRLA----TAGLPALQAEYASECGGAAATFRKCTDLANTIESISANLNVGLVPTSLIRVVDVVSSVIGLWAVLYSNVRAVKLFLRSQALVLLVVQVNVVIHAIANPRAKTRDEWFFLALMVLFGIFFGMYQLKVIWSYQMSLLRRSRCNQPSLSSDAAEAGGMIELDGSSQFV 253
            P Y  VGG+FD+GRPV +PLH+QRDARGVVP  R RRKEWWWQPGPVD+  +C+ +  GV   A   ++  +L  +S   RLA    T  +   + E+A +C G      KC  L  +I  ++   N  LVP  L   V ++   +GL A    + RA K  L  + L+ L+  V + I             W      +L  +   MY  KV+WSY + LL+++        S A    GM+ELD +S  V
Sbjct:    6 PVYVRVGGEFDEGRPVALPLHRQRDARGVVPPSRGRRKEWWWQPGPVDTVGFCWDLDMGVGLNAVGELVYGILAFASIGHRLAADTSTVVVQEKEEEFARDCEGLEQMPYKCERLIGSILELTL-ANDTLVPNVLAAAVLLMLGWLGLRAWWCFDARAAKFNLWLRPLMFLMSAVVMAIRVTKEMSYGRHPVWDLYVFWLLLMVLSMMYSSKVMWSYHIFLLKKT--------SRATREAGMVELDATSPTV 248          
BLAST of mRNA_C-linearis_contig91.16815.1 vs. uniprot
Match: D8LNW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.900e-20
Identity = 82/251 (32.67%), Postives = 120/251 (47.81%), Query Frame = 0
Query:    9 AYAPVGGKFDQGRPVGIPLHQQRDARGVVPQRNRRKEWWWQPGPVDSFWYCFPVSCGVVYGASCNVIVEVLLLSSTIRLAT--AGLPALQA----EYASECGGAAATFRKCTDLANTIESISANLNVGLVPTSLIRVVDVVSSVIGLWAVLYSNVRAVKLFLRSQALVLLVVQVNVVIHAIANPRAKTRDEWFFLALMVLFGIFFGMYQLKVIWSYQMSLLRRSRCNQPSLSSDAAEAGGMIELDGSSQFV 253
            AY PVG +FD GRP+G  + +     GV      RK+WWWQPGPVDS    F ++ GV   A+ ++IV   +    +   T  AGL  L A    +YA EC   A     C   A+ I S++   ++  VP  L  V+  +   +GL AV   +  A + +L S    +++  V +V+  I   R      W F  +  +  +    Y LKV WSY + + R +R      ++ AA+  G IELDGS   V
Sbjct:   10 AYVPVGSEFDGGRPLGERV-RFNGVGGV------RKDWWWQPGPVDSXXXXFSLAAGVAVLAALDIIVLGAMRLYYVSFVTGDAGLKQLLAGFEKKYAEECEDVAEASADCLAQASIILSLNKTNDL-YVPAVLQGVIAAIFGFVGLRAVFAHDALAARAYLWSWPPRIVLTLVELVMQRIRFERYDMGFLWGFTVVWNIPRVLILAYCLKVAWSYWVVVRRNNRA-----AATAADTSGSIELDGSRSSV 247          
BLAST of mRNA_C-linearis_contig91.16815.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.910e-5
Identity = 54/197 (27.41%), Postives = 88/197 (44.67%), Query Frame = 0
Query:   43 RKEWWWQPGPVDSFWYCFPVSCGVVYGAS----CNVIVEVLLLSSTI-RLATAGLPALQAEYASECGGAAATFRKCTDLANTIESISANLNVGL-----VPTSLIRVVDVVSSVIGLWAVLYSNVRAVKLFL---RSQALVLLVVQVNVVIHAIANPRAKTRDEWFFLALMVLFGIFFGMYQLKVIWSYQMSLLRRS 226
            R++WWWQPGPVDS  +C  +  GV   A+     N I       S I ++  A +  LQ+ Y  +C  A      C  L++ IE   A   V L     V   +  ++ +++  +GL+AV  SN  + K++L     +  V LV +    + A+         +   + +  L  +   +Y +KV WS+   L  RS
Sbjct:   26 RRQWWWQPGPVDSCCFCCSLRAGVGILAANDLFLNGIWSTFYSRSHIEKMLHAAIEILQSVYDKDCKDAPVQTEDCLQLSHNIEQ--AEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYT--LRAVMKQYGIDNSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLKARS 218          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKG8_ECTSI3.510e-3336.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNW6_ECTSI3.900e-2032.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNW7_ECTSI4.910e-527.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 217..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..188
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 189..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..168
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 162..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:252906..271896 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16815.1mRNA_C-linearis_contig91.16815.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig91 252495..272026 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig91.16815.1 ID=prot_C-linearis_contig91.16815.1|Name=mRNA_C-linearis_contig91.16815.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp
MSSSEQQPAYAPVGGKFDQGRPVGIPLHQQRDARGVVPQRNRRKEWWWQP
GPVDSFWYCFPVSCGVVYGASCNVIVEVLLLSSTIRLATAGLPALQAEYA
SECGGAAATFRKCTDLANTIESISANLNVGLVPTSLIRVVDVVSSVIGLW
AVLYSNVRAVKLFLRSQALVLLVVQVNVVIHAIANPRAKTRDEWFFLALM
VLFGIFFGMYQLKVIWSYQMSLLRRSRCNQPSLSSDAAEAGGMIELDGSS
QFV*
back to top