prot_C-linearis_contig90.16789.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig90.16789.1
Unique Nameprot_C-linearis_contig90.16789.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length328
Homology
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 477 bits (1228), Expect = 2.070e-167
Identity = 272/326 (83.44%), Postives = 285/326 (87.42%), Query Frame = 0
Query:    1 MEGVFGEEGEEEGXXXYAGLDRXXXXXXXXXXGATVLDGVVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNPRYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAERERLXXXXXXXXXXXXXXXXXXENLMFFNT 326
            M+GVF EEGE  G     G+     XXXX   GATVLD V+W+LG DKFHRDFRN +LLGLVQDRFPKSKLAYL VKVMLDNSSPTERKVDEQVSASISAR LFDKLC+ W+T+N TKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSD QNPRYVVN+A MVQYIR NLVKCT RDRYGKETARI+EILLQNK+LDQQQVGEMAMIPPSDARERLYRL+RDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVL+SLYKAMLNMRLRRKFVYSNDK LFIHDA             XXXXXXXXXXXXXXXXXXENLMFFNT
Sbjct:    1 MDGVFEEEGEG-GHAEEEGV--LGGXXXXIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNT 323          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 154 bits (389), Expect = 1.060e-38
Identity = 83/267 (31.09%), Postives = 152/267 (56.93%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR GV +  RD R+ + +    +    + +A + V+ ML +SSP ER+ DE  S  +SAR LF+             ++A   WR  ++++  +C D + MV K+   +A +P         +YVV++  +V++++    +  ++D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         +ND ++
Sbjct:  320 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLFEME----SVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 579          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 154 bits (390), Expect = 1.320e-38
Identity = 85/267 (31.84%), Postives = 151/267 (56.55%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR GV +  RD R+ + +    +    + +A + V  ML +S+P ER+ DE  SA +SAR LF+         N    +A   WR  ++++  +C D + MV K+   +A +P         +YVV++  +V++++       ++D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   V + +  ++  +R RRKF    +KEL         +ND ++
Sbjct:  382 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNME----SVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 641          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 154 bits (389), Expect = 1.450e-38
Identity = 84/257 (32.68%), Postives = 151/257 (58.75%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKEL 282
            +VWR G+ +  RD R+ + +    +    + +A + V+ ML +SSP ER+ DE  SA +SAR LF+           +  KA+P      WR  +++++ +C D + M+ K+   +A +P         +YVV++  +V++++   V   ++D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL
Sbjct:  354 LVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME---------SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKV-AQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKEL 598          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 153 bits (386), Expect = 2.600e-38
Identity = 86/272 (31.62%), Postives = 152/272 (55.88%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR GV +  RD R+ + +    +    + +A + V  ML +SSP ER+ DE  S  +SAR LFD           +  KA+P      WR  ++++  +C D + MV K+   +A +P         +YVV++  +V++++       ++D+YG  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL         +ND ++
Sbjct:  313 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDME---------SVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 572          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.230e-37
Identity = 81/267 (30.34%), Postives = 150/267 (56.18%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR GV +  RD R+ + +    +    + +A + V  ML +S+P ER+ DE +SA +SAR LF          N   +++   WR  ++++  +C D + MV K+   +A +P         +YVV++  +V++++       ++D++G  +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L  +++V +QE+PKRAD NP  TF+ W++    +   + + +  ++  +R RRKF    +KEL          ND ++
Sbjct:  364 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGME----SVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEGNDLDK 623          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.000e-36
Identity = 88/273 (32.23%), Postives = 147/273 (53.85%), Query Frame = 0
Query:   33 GATVLDGVVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            GA     +VWR G D+  RD R+ + +    +    + +A + V  ML +SSP ER+ DE  S  ++AR LF            +K+     WR  +++++ +C D + MV K+     DA   R      YVV++  +V ++R       V+D++G  +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY L  +R+V +QEVPKRAD NP  T Y W++   ++ + V + +  ++  +R RRK     +KEL         +ND  +
Sbjct:  368 GALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELFAVPAVKSALPKDSKDT----WRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIARSDQLVEANDVAK 634          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 142 bits (359), Expect = 2.060e-34
Identity = 79/256 (30.86%), Postives = 147/256 (57.42%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKEL 282
            +VWR G+ +  R+ R+ + +    +    + +A + V  ML++SSP ER+ +E  SA +SAR L++           T  KA+P      WR  +++++ +C D + M+ K+     D+   R      YVV++  +V++++       ++DR+G  +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RR F    +KEL
Sbjct:  359 LVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKEL 603          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.490e-34
Identity = 83/270 (30.74%), Postives = 143/270 (52.96%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD----WRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR G  +  RD R+ + +    +    + +A + V  ML +SSP ER+ DE  S  +SAR LF             K+   P+    WR  ++++  +C D + MV K+     D    R      YVV++  +V+++R       V+D++G  +ARI+ +L++ + L+Q+ +GE+A++P +D R RLY L  +++V +QEVPKRAD NP  TF+ W++   ++   V + +  ++  +R RRK     +KEL          ND ++
Sbjct:  365 LVWRFGAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARELF--------AMESVKSALPPESNNPWRLLLNYIMVMCRDKSGMVMKVSQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKELIARSELLVEGNDLDK 624          
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.230e-32
Identity = 74/269 (27.51%), Postives = 151/269 (56.13%), Query Frame = 0
Query:   40 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLF--DKLCQTWKTSNFTKNKAVPD-WRRFVSWMSALCTDLTSMVSKIPGSDAQ--------NPRYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 297
            +VWR G D+  R+ R+++ +    +    + +A + V  ML  S   ER+ +E  S  ++AR ++  D++ Q          K + D WR  +++++ +  D + M++++    A           +YVV++ N+  Y++   +   ++D++G ++ARI+ ++L+ + L+Q+ +GE+A++P ++AR RLY L RD+++ +QE+PKR+D NP  T Y W++    + +V+ + +  ++  +R RR F+   +KEL    +     ND E+
Sbjct:  360 LVWRCGTDQLLRELRHDAFVRFAMENV--NHVAGVIVSAMLSYSMSHERESNEPTSFPMTAREIYKVDEVKQALP-------KEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEK 619          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI2.070e-16783.44DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
H3GD40_PHYRM1.060e-3831.09DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI1.320e-3831.84DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
A0A0P1AWK6_PLAHL1.450e-3832.68DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
G4Z0C0_PHYSP2.600e-3831.62DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A3R7FY14_9STRA5.230e-3730.34DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
A0A5D6XL36_9STRA2.000e-3632.23DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A484E8N6_BRELC2.060e-3430.86DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A662YGR9_9STRA3.490e-3430.74DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A024GFJ4_9STRA1.230e-3227.51DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 293..320
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 161..249
e-value: 5.9E-29
score: 101.8
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 170..263
e-value: 3.4E-8
score: 33.3
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 21..326
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 167..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:607509..612989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16789.1mRNA_C-linearis_contig90.16789.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig90 606670..612989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig90.16789.1 ID=prot_C-linearis_contig90.16789.1|Name=mRNA_C-linearis_contig90.16789.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=328bp
MEGVFGEEGEEEGEDEYAGLDRGAGKGKGEGVGATVLDGVVWRLGVDKFH
RDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISA
RTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSD
AQNPRYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQ
QVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKH
DQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAERERL
DQVRRSLDRLDTALLRLDENLMFFNTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR039748RPC3
IPR036390WH_DNA-bd_sf