prot_C-linearis_contig90.16759.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig90.16759.1
Unique Nameprot_C-linearis_contig90.16759.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length234
Homology
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BLAST of mRNA_C-linearis_contig90.16759.1 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.480e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:  175 MELILTSFLSPILWAIPQGAVQNMMINLHPTDLTQVACVCQDWRQLAQDVPTLAPGVVD 233
            MELILTSFLSPILW IP+GAVQNMM NLHPTDLTQVACVCQDWRQLAQDVP LAPGVVD
Sbjct:    1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE7.480e-3293.22F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 6..39
e-value: 3.2E-4
score: 20.5
IPR001810F-box domainPFAMPF12937F-box-likecoord: 141..174
e-value: 4.9E-6
score: 26.3
IPR001810F-box domainPROSITEPS50181FBOXcoord: 137..186
score: 8.544
NoneNo IPR availableGENE3D1.20.1280.50coord: 137..189
e-value: 4.6E-5
score: 25.3
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 186..223
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 5..38
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 127..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:121692..124799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16759.1mRNA_C-linearis_contig90.16759.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig90 120184..124842 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig90.16759.1 ID=prot_C-linearis_contig90.16759.1|Name=mRNA_C-linearis_contig90.16759.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=234bp
MARQQLSDLPKEVMWRVIQFVDESHRVQCKMISRRWQHYGLNRGRGNATA
LRKAKGTLPNELLVGLVLQFLDEPDDGDRLRHIAKVWAAYLQRAAAAAAA
AAAMAAAGGGEEGADSLPPLLPGMPMGFGPATEPGPLDTTGRLPNELLES
MFDYLDEDMTMNCASVARRWRSSAMELILTSFLSPILWAIPQGAVQNMMI
NLHPTDLTQVACVCQDWRQLAQDVPTLAPGVVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf