prot_C-linearis_contig9.16741.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16741.1
Unique Nameprot_C-linearis_contig9.16741.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length247
Homology
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BLAST of mRNA_C-linearis_contig9.16741.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.250e-74
Identity = 155/229 (67.69%), Postives = 174/229 (75.98%), Query Frame = 0 
Query:   18 LCGAILSAGLTTTSAFVSTTIPMASSSLALRPQHLQSGSGSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGVGGEGLAAAGSALASAVGQAHASAMGSGLGAFLLLADEEAVPPNIFGEVAQGGIFIIFSGVFSAYIMATLIRNMPLDQLEALTAELGGGVEIEEIEAQRIETAKRFKELTKEMELAVDPTMGVKPDEKLSKKLTEQTAKAMQTDIASIEDEYDD 246
            L GA+L AGLT TSAFVSTT P+ SSSL+ R            XXXXXXXXXXXXX                 GGVGGEGLA  GS ++ AVGQAHASAMGSG+G FLLLAD+   PPNI+GEVAQGG FIIFSGVFSAYI+AT+IRNMP+DQLE LTAELGGG EI ++EAQRIET KRFKELTK+M  A DPTMGVKPD  LS++L++QT KA+QTDIASIEDEY D
Sbjct:    9 LLGALLGAGLTATSAFVSTT-PVVSSSLSARQLVXXXXXXXXXXXXXXXXXXXXXXRAMLFGG----------GGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQGGFFIIFSGVFSAYIIATMIRNMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDGALSERLSQQTTKALQTDIASIEDEYGD 226
[Close]
BLAST of mRNA_C-linearis_contig9.16741.1 vs. uniprot
Match: D7FMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV7_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 8.120e-44
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 0 
Query:  124 FLLLADEEAVPPNIFGEVAQGGIFIIFSGVFSAYIMATLIRNMPLDQLEALTAELGGGVEIEEIEAQRIETAKRFKELTKEMELAVDPTMGVKPDEKLSKKLTEQTAKAMQTDIASIEDEYDD 246
            FL LA    + P     V   G FIIFSGVFSAYI+AT+IR MP+DQLE LTAELGGG EI ++EAQRIET KRFKELTK+M  A DPTMGVKPD+ LS++L++QT KA+QTDIASIEDEY D
Sbjct:   13 FLRLAFSCLLHPFSTRFVFHRGFFIIFSGVFSAYIIATMIRTMPIDQLEKLTAELGGGNEIADLEAQRIETTKRFKELTKDMAQAADPTMGVKPDDALSERLSQQTTKALQTDIASIEDEYGD 135
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGI3_9PHAE1.250e-7467.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV7_ECTSI8.120e-4468.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 223..246
NoneNo IPR availableCOILSCoilCoilcoord: 184..204
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..143
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..246
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..163
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..32
score: 0.512
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3693389..3697783 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16741.1mRNA_C-linearis_contig9.16741.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3693251..3698558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16741.1 ID=prot_C-linearis_contig9.16741.1|Name=mRNA_C-linearis_contig9.16741.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=247bp
MHPFASTGSSLSSVMILLCGAILSAGLTTTSAFVSTTIPMASSSLALRPQ
HLQSGSGSTAAAAAAAAAAAVTTARSTRRPATTTTTSMMLGGVGGEGLAA
AGSALASAVGQAHASAMGSGLGAFLLLADEEAVPPNIFGEVAQGGIFIIF
SGVFSAYIMATLIRNMPLDQLEALTAELGGGVEIEEIEAQRIETAKRFKE
LTKEMELAVDPTMGVKPDEKLSKKLTEQTAKAMQTDIASIEDEYDD*
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