prot_C-linearis_contig9.16731.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16731.1
Unique Nameprot_C-linearis_contig9.16731.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length155
Homology
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BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Match: D7FR09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR09_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.340e-19
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 0 
Query:   29 MRLISLL-AALAAAQGARGFVVQ-RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAKAEEILSMGSSPSIGIMREASGSTQQVGDLELAKFLQAKTSAASSDCLAQTI 151
            MRL++L  AALAA  GA+GFVVQ R P+      +++RR  ++ P+MCVPKEVAAA++V GAG++LTQGVPPAKA +++ M  S ++ I RE  G+ Q  G     + L+AK S  S +  AQ +
Sbjct:    1 MRLVNLFFAALAAPLGAQGFVVQHRTPL-----VASSRRVGSMTPTMCVPKEVAAAIVVAGAGYILTQGVPPAKAADMVPMSGSATVCITREVDGAPQLDGP-GFVRALEAK-SVLSHESFAQCV 118
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BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Match: A0A6H5KE54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE54_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.050e-15
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   29 MRLISL-LAALAAAQGARGFVVQ-RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAKAEEILSMGSS 110
            MRL++L LA LAA  GA+GFVVQ R P+    P     R  ++ P+MCVPKEVAAA++V GAG++LTQGVPPAKA +++ M  S
Sbjct:    1 MRLVNLFLAPLAAPLGAQGFVVQHRTPLVASSP-----RVGSIAPTMCVPKEVAAAIVVAGAGYILTQGVPPAKAADMVPMSGS 79
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR09_ECTSI1.340e-1948.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE54_9PHAE1.050e-1555.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 42..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..154
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..46
score: 0.453

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3489870..3491790 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16731.1mRNA_C-linearis_contig9.16731.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3488343..3491868 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16731.1 ID=prot_C-linearis_contig9.16731.1|Name=mRNA_C-linearis_contig9.16731.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MTADCCATRLQLFSRAQQSKKPISSSIAMRLISLLAALAAAQGARGFVVQ
RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAK
AEEILSMGSSPSIGIMREASGSTQQVGDLELAKFLQAKTSAASSDCLAQT
ILDV*
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