mRNA_C-linearis_contig9.16731.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16731.1
Unique NamemRNA_C-linearis_contig9.16731.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Match: D7FR09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR09_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.960e-17
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:  163 MRLISLL-AALAAAQGARGFVVQ-RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAKAEEILSMGSSPSIGIMREASGSTQQVGDLELAKFLQAKTSAASSDCLAQTI 531
            MRL++L  AALAA  GA+GFVVQ R P+      +++RR  ++ P+MCVPKEVAAA++V GAG++LTQGVPPAKA +++ M  S ++ I RE  G+ Q  G     + L+AK S  S +  AQ +
Sbjct:    1 MRLVNLFFAALAAPLGAQGFVVQHRTPL-----VASSRRVGSMTPTMCVPKEVAAAIVVAGAGYILTQGVPPAKAADMVPMSGSATVCITREVDGAPQLDGP-GFVRALEAK-SVLSHESFAQCV 118
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BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Match: A0A6H5KE54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE54_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-13
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  163 MRLISL-LAALAAAQGARGFVVQ-RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAKAEEILSMGSS 408
            MRL++L LA LAA  GA+GFVVQ R P+    P     R  ++ P+MCVPKEVAAA++V GAG++LTQGVPPAKA +++ M  S
Sbjct:    1 MRLVNLFLAPLAAPLGAQGFVVQHRTPLVASSP-----RVGSIAPTMCVPKEVAAAIVVAGAGYILTQGVPPAKAADMVPMSGS 79
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR09_ECTSI5.960e-1748.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE54_9PHAE1.180e-1355.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3488343..3491868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2070
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16731.1prot_C-linearis_contig9.16731.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3489870..3491790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.1123307-UTR-C-linearis_contig9:3488342..34898691622930763.1123307-UTR-C-linearis_contig9:3488342..3489869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3488343..3489869 -
1690881236.911912-UTR-C-linearis_contig9:3488342..34898691690881236.911912-UTR-C-linearis_contig9:3488342..3489869Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3488343..3489869 -
1622930763.1688392-UTR-C-linearis_contig9:3491790..34918681622930763.1688392-UTR-C-linearis_contig9:3491790..3491868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3491791..3491868 -
1690881236.9550078-UTR-C-linearis_contig9:3491790..34918681690881236.9550078-UTR-C-linearis_contig9:3491790..3491868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3491791..3491868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.1293018-CDS-C-linearis_contig9:3489869..34899941622930763.1293018-CDS-C-linearis_contig9:3489869..3489994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3489870..3489994 -
1690881236.9311993-CDS-C-linearis_contig9:3489869..34899941690881236.9311993-CDS-C-linearis_contig9:3489869..3489994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3489870..3489994 -
1622930763.148657-CDS-C-linearis_contig9:3491450..34917901622930763.148657-CDS-C-linearis_contig9:3491450..3491790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3491451..3491790 -
1690881236.9433572-CDS-C-linearis_contig9:3491450..34917901690881236.9433572-CDS-C-linearis_contig9:3491450..3491790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3491451..3491790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16731.1

>prot_C-linearis_contig9.16731.1 ID=prot_C-linearis_contig9.16731.1|Name=mRNA_C-linearis_contig9.16731.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MTADCCATRLQLFSRAQQSKKPISSSIAMRLISLLAALAAAQGARGFVVQ
RAPIAGQMPTSAARRATAVGPSMCVPKEVAAAMLVVGAGFLLTQGVPPAK
AEEILSMGSSPSIGIMREASGSTQQVGDLELAKFLQAKTSAASSDCLAQT
ILDV*
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mRNA from alignment at C-linearis_contig9:3488343..3491868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16731.1 ID=mRNA_C-linearis_contig9.16731.1|Name=mRNA_C-linearis_contig9.16731.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3526bp|location=Sequence derived from alignment at C-linearis_contig9:3488343..3491868- (Chordaria linearis ClinC8C monoicous)
TATACTTTGTTTTTGAAGTAGCACCCCCCCAATCGCTCAATTTGTTTTCT
TGTTTTCTTCGTTCCCCCGGGATGTTGCATGACTGCTGACTGCTGTGCGA
CGCGCCTGCAGCTCTTTTCTCGCGCCCAACAAAGTAAGAAACCCATCTCG
TCCTCCATCGCTATGCGTCTTATTTCGCTCCTCGCTGCCCTGGCTGCGGC
CCAGGGCGCGCGCGGCTTTGTGGTGCAGAGGGCGCCGATCGCCGGTCAGA
TGCCGACCTCAGCAGCACGAAGAGCAACTGCCGTGGGACCCAGCATGTGT
GTGCCCAAGGAGGTGGCGGCCGCCATGCTGGTCGTCGGAGCTGGCTTCCT
GTTGACGCAAGGGGTGCCTCCGGCGAAGGCGGAGGAAATTCTTTCGATGG
GCAGCAGTCCCTCCATTGGTGAGCACAGCAGGAAGAGCCCAGCGCTTGTT
TGGAAAATACTATTTGCACAGCAGTAGTTGAACTTGTCCGAGAGGTTCAA
CCGTTCATGTTTGTCTCCCGGCCGCTCTCTGGCGGAGGGCTGTGTGTGGG
GAGGAGCCTTTTTTGAGGTCTCTCTGTGCGTGCATGGTGCTTGCAATCAT
TGGGCATTGGGAGAGAGAAAAGGCGAGGTCAACAAAAGTTAGTAGGCGGA
GGGGCGCCTTGGCTTCGCCGAAGTGCAGCTCCTTTGTTCTCCGTCTTGAG
GTCTGCTCTCAAAATTTGTTAGGCGTGATCGGGACGGTTCTCGCTACTCT
GCTGGCGCTGGCACGCCTCATGTTGCTCCTCACATGTCGATGTTTTGGTC
AGCGTTTTGGCGTCGATCAAGTCTTGCAGACAACGGCTTATTTAGCTGAA
TCAAAGATATCCGCCATGTACAGCAGTGATCCTTTCCCCCCATATAGGCA
ATGATGTGTGTGCGTGGTTTCCAGCACTTGAGACTACGCTTTCGTGTTCG
CTTGACATCATCCTTTGCGTTCCCAAACTCGAAAACCTGCTTTACGCACA
ACTGCTGACTTATTTAAACTCTCTCGGCTGATCGATGATGACAGCAGCAG
TGCAGTGTCTCACGGTTTCGGGTTTCTCGCGATTTTCTGCGCTTCGTGGC
ATTGCCACTGATAGGTAGCCCCCTAGTCAGCGCTTAGCCGGCTGACAACT
TTAGTGCGGGGGATTAGCCCTCCTAAGCTAGTCAGCGGTTAGCCGGCTGA
CTACTTTAGTGCGGGGGATTAGCCCTCCTAATCTATCAGCCACGATAATA
CTTATTGATGGTTCACTGCGTCCCTAGCTCGGCTTTTGCTGTTGGCGTCG
CTTGTTCCGCACCTCGAGCACCCGTAAGAGTGCTTCTCGAAGCAGTTGGC
ATCGTCTGTTCTGTAGTGACGTGCGTGGCTCACTTCTCATTTCCTTCCCA
ACCGTCCGCATACTATGTACAGCTGCGGCAGACGACATTTATGTCGTGTC
GATTGGTTTATCCAGGATGGTACAAGGATTCGACTAGGTTGCTTGCGCAT
TTTGAACCTCCACGACCGCCCCGGCCATTATTGGCGAGCGCAGAGAGCAA
AGGCGTGCGCAGCCCCCCCCGTGGGCGGAAAGCCCACACGGCACCTCAGT
AGCTCGCTTTGGGCACGGTGTCTGCAAACGGCACGTAAATCTCGTGGGTT
GTGGGCGGTTTCCATGTAGCTGATTGTCTTAGTTTCCCGCCGTGTGAAGA
ATCAGGAACGCTGGATATCTTCGGGCCAGACACGCAGCTTGTGCTGCGCC
CTGCATACCATGATAAAGAATTTACCGCCAACATGAAGAAGGGTGGGTGG
CAACCACAAGTGCGTAGTATGTGCACCGCCATTGCTTTGGCCCCCTTGCG
TTCTGCTTGTCGATTTTACTTCAGGTATCATGCGTGAGGCCAGCGGCAGC
ACGCAGCAGGTCGGCGATCTGGAGTTGGCCAAGTTTCTTCAAGCCAAGAC
ATCAGCTGCATCCTCGGACTGCCTCGCCCAGACAATTCTGGACGTCTAGG
CACCGTTTGCGCCTTTCAAAAGTACGCGTTCTCCCCAAATTGTCCTGTAT
TTTTTGTATTTATCAAGTGTTTAAATGCTTTTGTCCGGAGTAAAGACAGC
TTCCACGGGAAAACACTTAACACAAAACGGCCCAGGCGGTTCCTTGTCTG
GCCACACGCTGGATACCATGTTTCTGACGTGGTAGGTGCCAGAAGCTTGT
CGCAACTGGCGCGGAGGCGTTACGACTGCTCGCCCAACATATCTACTCCT
CAGAGGTTTTATGGGGTCCAAGCACACTTGCTGCAGCGTTGAATGCCTTG
AAACAAGCCGAAAACAAGTCGAAAGCCGAATGCCATGATATGGATAGTTC
CGCCAAGCACAACTTGAGAAATAAGCTCGAGCATGATGGTGCCCAGCAGG
TCCTTCTCTTGTCTCCCTTTTTTTTTCAATCCCCCCCCCACCACCTCCTG
CCCGATACCTGCTGCTCGTGTGCAGAAAAAGAGTTGCTCCCGCGCCAAGA
TTTTGTTTTTGCTGGTAGCCGCAGCGGGTGGTACACAGCAAGGGAACGAC
TGGAGGTGCCCACCTGAGCAGATAAAACGCTGCTACCAGCGGTCGCCGAA
TGGGGGCGTGACTGGCTTGTCCAACCCAGGGGGCTTGCGTATAGATATTA
CGCACATCTGCTCTGCATAAGGTCGATGTTGAGGGATTTGTACGTTTGGG
TGATTTCTTTTTTCTTTTTAAAGGGCGGGGTACGTGAGACGAAAGGATTT
GATGGTACACGGTCCTGGTGTGGCATGTTTCAGGTATGTTTTGAGCTCTA
GAGAGAAGGGATGTTGGAGCTGAGATAAAAAGGGAGGTTTTCGGCGAGGA
AGGCAGGCGTTGCGGTAGGCGGGCGGCTAGTGTTAAAAAAAACGACCAAG
ACTGGCACCTCGAACAGGTCGTGGGAGATGGGGGATACGTTCCTCAGATA
GAGCTGCCTCACTTAAGCACAAAGCTAATATGCACATCGTCGTTCGTTGG
GGGCGCTCCTTTTCACGGAGGGAGTTGAAGCACGCCATACCTGTCTGGAT
TCTTGGTTGCATGACTTGTCGGAAAGAAAATCAAACGTTTACAAGTCATG
TAGACTATTATAGGCCTGTTTTTTGTTGTTTGTTTTTCGATGCCTCTTTC
TGTGCTGTTCTGTGTCGGTGTCACCCCTTTTCGCCGGAACTACAGCGGCA
GTGATGTCAGTTCCGGAAGCGTGTGTTGATGGACGAGAAAACACACTAGT
ACATACAGGCGAATGCTGTGGCCTCGACGCACCATGACAAAGGGGTATTT
CGTGTGCCTTTGTTTTTTGTTCTCGACCCGCGGGTGGTGCGTGCGCTCCT
TGAATATCCAGCTACGTACAGCCTATTTCTCCAAGCAGTAGTACTAGGAG
TAGGTGAAGGTCTTGGGGGTAGATTTGAACAGCGGCATGTGATGGCAGGG
GAGGCACAAGACAAAAAAAGGTCTCCAGCATCGCCCTGCAAAAAACGAAA
ACGTACGAGTTTTTCACGGCGAGACG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3488343..3491868-

>mRNA_C-linearis_contig9.16731.1 ID=mRNA_C-linearis_contig9.16731.1|Name=mRNA_C-linearis_contig9.16731.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig9:3488343..3491868- (Chordaria linearis ClinC8C monoicous)
ATGACTGCTGACTGCTGTGCGACGCGCCTGCAGCTCTTTTCTCGCGCCCA
ACAAAGTAAGAAACCCATCTCGTCCTCCATCGCTATGCGTCTTATTTCGC
TCCTCGCTGCCCTGGCTGCGGCCCAGGGCGCGCGCGGCTTTGTGGTGCAG
AGGGCGCCGATCGCCGGTCAGATGCCGACCTCAGCAGCACGAAGAGCAAC
TGCCGTGGGACCCAGCATGTGTGTGCCCAAGGAGGTGGCGGCCGCCATGC
TGGTCGTCGGAGCTGGCTTCCTGTTGACGCAAGGGGTGCCTCCGGCGAAG
GCGGAGGAAATTCTTTCGATGGGCAGCAGTCCCTCCATTGATGACTGCTG
ACTGCTGTGCGACGCGCCTGCAGCTCTTTTCTCGCGCCCAACAAAGTAAG
AAACCCATCTCGTCCTCCATCGCTATGCGTCTTATTTCGCTCCTCGCTGC
CCTGGCTGCGGCCCAGGGCGCGCGCGGCTTTGTGGTGCAGAGGGCGCCGA
TCGCCGGTCAGATGCCGACCTCAGCAGCACGAAGAGCAACTGCCGTGGGA
CCCAGCATGTGTGTGCCCAAGGAGGTGGCGGCCGCCATGCTGGTCGTCGG
AGCTGGCTTCCTGTTGACGCAAGGGGTGCCTCCGGCGAAGGCGGAGGAAA
TTCTTTCGATGGGCAGCAGTCCCTCCATTGGTATCATGCGTGAGGCCAGC
GGCAGCACGCAGCAGGTCGGCGATCTGGAGTTGGCCAAGTTTCTTCAAGC
CAAGACATCAGCTGCATCCTCGGACTGCCTCGCCCAGACAATTCTGGACG
TCTAGGTATCATGCGTGAGGCCAGCGGCAGCACGCAGCAGGTCGGCGATC
TGGAGTTGGCCAAGTTTCTTCAAGCCAAGACATCAGCTGCATCCTCGGAC
TGCCTCGCCCAGACAATTCTGGACGTCTAG
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