prot_C-linearis_contig9.16729.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16729.1
Unique Nameprot_C-linearis_contig9.16729.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length246
Homology
BLAST of mRNA_C-linearis_contig9.16729.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 1.910e-87
Identity = 155/247 (62.75%), Postives = 179/247 (72.47%), Query Frame = 0
Query:    1 MPILGKAKCTDFLRRWTRASLATSVEAFDGVWKDVEDMVKGTGCQEYINSRTSEYPFAPESTFFHWARCFHPTVMTLDMTSPQRVEGTFGVLKTGRVLRRNSTFRQMRTGCGTAPPRIQNVSALEVTKRI-LRKGYVEHDVKKPMEKII----DRGWSQQIRAGEVWSEMLASLAYDASTMVVEGHASMQFLQHLATRSATDSNDTTNGGGHDDGNGDVCCQVPKEVLEEEEAPDTTIFGPRRCMHS 242
            + IL   KC D LRRWTRASLATS+EAFDGVW DVED+VKGT C+EYI        F  E    HWARCFHPTVMTLDMTS QRVEGTF VLK GRVLRRNSTFRQ+R  C      ++  S ++ TK+  L KGYVE+DVKK MEK++    + G S+  +  E+W+EMLAS AYD S +V EG  SMQFLQ+LATRS  DSND+TN  GHD G GDVCCQVPKEV EE+EAPDTT+FG    +HS
Sbjct:  185 LSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYI------LKFLYERRK-HWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKE-EIWAEMLASSAYDTS-IVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTT-SLHS 421          
BLAST of mRNA_C-linearis_contig9.16729.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.670e-36
Identity = 98/301 (32.56%), Postives = 151/301 (50.17%), Query Frame = 0
Query:    6 KAKC-----TDFLRRWTRASLATSVEAFDGVWKDVEDMVKGTGCQEYINSRTSEYPFAPESTFFHWARCFHPTVMTLDMTSPQRVEGTFGVLKTGRVLRRNSTFRQMRTGCGTAPPRIQNVSALEVTKRI--------------------------------------------------------LRKGYVEHDVKKPMEKII---DRGWSQQIRAGEVWSEMLASLAYDASTMVVEGHASMQFLQHLATRSATDSNDTTNGGGHDDGNGDVCCQVPKEVLEEEEAPDTTIFGPRRCMHS 242
            K KC      D +RR+T AS ATS++AF+ +W +++++V+GT C+EYIN     Y F       HWARC HPT MTL MT+ QRVEG+F V+K G  +R+NSTF  +R    T    +   S + V++ +                                                        LR  ++E DVKK +E ++   ++  +      E+ +EM+AS +YD +T++V+G  S +FL+ LA + +           ++DGNGDVCCQVP +V + ++ PDT++FG   C+ S
Sbjct:  966 KRKCGGEVFADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYING----YLFDQRK---HWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRMWVSRGVKARVALYHIFILIHCIGMYGLLRGVSHTVEPASFTITSITAVRCLSPCRLSTKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYD-TTVLVKGRESKRFLEDLAAQPS-----------NNDGNGDVCCQVPADVFDGKKHPDTSMFGTT-CLQS 1246          
BLAST of mRNA_C-linearis_contig9.16729.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 9.620e-5
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0
Query:  158 AGEVWSEMLASLAYDASTMVVEGHASMQFLQHLATRSATDSNDTTNGGGHDDGNGDVCCQVPKEVLEEEEAPDTTIFGPRRCMHS 242
            A E  SEML  L Y    ++VEG  SM+FL+ L    +           + DGNGDVCC+VP+E  + ++ P+T  FG   C+ S
Sbjct:    4 ASEFMSEMLTFLYY-CPEVLVEGKGSMRFLEDLTAHPS-----------NRDGNGDVCCEVPREAFDGKDNPETK-FGAI-CLQS 74          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.910e-8762.75Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE2.670e-3632.56SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE9.620e-538.82SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3440102..3445801 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16729.1mRNA_C-linearis_contig9.16729.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3439455..3446375 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16729.1 ID=prot_C-linearis_contig9.16729.1|Name=mRNA_C-linearis_contig9.16729.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MPILGKAKCTDFLRRWTRASLATSVEAFDGVWKDVEDMVKGTGCQEYINS
RTSEYPFAPESTFFHWARCFHPTVMTLDMTSPQRVEGTFGVLKTGRVLRR
NSTFRQMRTGCGTAPPRIQNVSALEVTKRILRKGYVEHDVKKPMEKIIDR
GWSQQIRAGEVWSEMLASLAYDASTMVVEGHASMQFLQHLATRSATDSND
TTNGGGHDDGNGDVCCQVPKEVLEEEEAPDTTIFGPRRCMHSTSS*
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