prot_C-linearis_contig9.16704.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16704.1
Unique Nameprot_C-linearis_contig9.16704.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length298
Homology
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BLAST of mRNA_C-linearis_contig9.16704.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.480e-99
Identity = 197/312 (63.14%), Postives = 220/312 (70.51%), Query Frame = 0 
Query:    1 MLASATEVEVEIHVPDDVSTFFGVTWAQDPRQEKIFIKAFPRGSDGRRGILEPTGLVEINDCLTAINGVPLDKSSDLREVMASIRAAKSPLSLRFARYPPPRL--CSSSPSSSXXSLFSASAVPALASPAGTDSLGGSGSS------------------VGSAYAAGARARAGTGDTK----------------------NREAADPELDDILNSALVLGLGERVAGIQKRNAQLLQEVDRIGRAAADKRQQGVERVASAAASLTAAGTKLLPQQALQLLSAARQDAVALCGAMARLNDLLAARERAQMARR 270
            MLASATEVEVE+HVPDDVSTFFGVTWAQDPR+ KIFIKAFPRG +GRRGILE TGLVE++DCLTAINGV +DKSS L EVMASIRAA+SPLSLRFARYPPP L  CS S S S  SLFS    P+ ++P                              +G    AG                                  R+AADP+LD +LNSALVLGLGERVA IQKRN++LLQEVDRIGRAAADKR QGVERVASAAASLTAAG+ LLP++AL+LLSAARQDAVALC AMARL++LLAARERAQ+ARR
Sbjct:    1 MLASATEVEVELHVPDDVSTFFGVTWAQDPRKNKIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSLRFARYPPPPLQRCSPSSSLSSPSLFS----PSPSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRHIGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAADPDLDAVLNSALVLGLGERVADIQKRNSRLLQEVDRIGRAAADKR-QGVERVASAAASLTAAGSDLLPRRALRLLSAARQDAVALCEAMARLDELLAARERAQLARR 307
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16704.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI1.480e-9963.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 255..275
NoneNo IPR availableGENE3D2.30.42.10coord: 3..107
e-value: 4.6E-5
score: 25.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 9..99
score: 9.069

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3198417..3200479 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16704.1mRNA_C-linearis_contig9.16704.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3198417..3200702 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16704.1 ID=prot_C-linearis_contig9.16704.1|Name=mRNA_C-linearis_contig9.16704.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MLASATEVEVEIHVPDDVSTFFGVTWAQDPRQEKIFIKAFPRGSDGRRGI
LEPTGLVEINDCLTAINGVPLDKSSDLREVMASIRAAKSPLSLRFARYPP
PRLCSSSPSSSSSSLFSASAVPALASPAGTDSLGGSGSSVGSAYAAGARA
RAGTGDTKNREAADPELDDILNSALVLGLGERVAGIQKRNAQLLQEVDRI
GRAAADKRQQGVERVASAAASLTAAGTKLLPQQALQLLSAARQDAVALCG
AMARLNDLLAARERAQMARRRALEQEDWRGRGAGGGLSSGGGGGGDGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ