mRNA_C-linearis_contig9.16704.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16704.1
Unique NamemRNA_C-linearis_contig9.16704.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16704.1 vs. uniprot
Match: D8LSM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM8_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 2.050e-98
Identity = 197/312 (63.14%), Postives = 220/312 (70.51%), Query Frame = 2 
Query:  224 MLASATEVEVEIHVPDDVSTFFGVTWAQDPRQEKIFIKAFPRGSDGRRGILEPTGLVEINDCLTAINGVPLDKSSDLREVMASIRAAKSPLSLRFARYPPPRL--CSSSPSSSXXSLFSASAVPALASPAGTDSLGGSGSS------------------VGSAYAAGARARAGTGDTK----------------------NREAADPELDDILNSALVLGLGERVAGIQKRNAQLLQEVDRIGRAAADKRQQGVERVASAAASLTAAGTKLLPQQALQLLSAARQDAVALCGAMARLNDLLAARERAQMARR 1033
            MLASATEVEVE+HVPDDVSTFFGVTWAQDPR+ KIFIKAFPRG +GRRGILE TGLVE++DCLTAINGV +DKSS L EVMASIRAA+SPLSLRFARYPPP L  CS S S S  SLFS    P+ ++P                              +G    AG                                  R+AADP+LD +LNSALVLGLGERVA IQKRN++LLQEVDRIGRAAADKR QGVERVASAAASLTAAG+ LLP++AL+LLSAARQDAVALC AMARL++LLAARERAQ+ARR
Sbjct:    1 MLASATEVEVELHVPDDVSTFFGVTWAQDPRKNKIFIKAFPRGPNGRRGILESTGLVELDDCLTAINGVSVDKSSALHEVMASIRAAESPLSLRFARYPPPPLQRCSPSSSLSSPSLFS----PSPSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRHIGAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDAADPDLDAVLNSALVLGLGERVADIQKRNSRLLQEVDRIGRAAADKR-QGVERVASAAASLTAAGSDLLPRRALRLLSAARQDAVALCEAMARLDELLAARERAQLARR 307
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM8_ECTSI2.050e-9863.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3198417..3200702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-09_002240.1
Exons3
Model size1117
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16704.1prot_C-linearis_contig9.16704.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3198417..3200479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.1464581-CDS-C-linearis_contig9:3198416..31986831622930759.1464581-CDS-C-linearis_contig9:3198416..3198683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3198417..3198683 -
1690881234.7287378-CDS-C-linearis_contig9:3198416..31986831690881234.7287378-CDS-C-linearis_contig9:3198416..3198683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3198417..3198683 -
1622930759.1592607-CDS-C-linearis_contig9:3199318..31998431622930759.1592607-CDS-C-linearis_contig9:3199318..3199843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3199319..3199843 -
1690881234.7389905-CDS-C-linearis_contig9:3199318..31998431690881234.7389905-CDS-C-linearis_contig9:3199318..3199843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3199319..3199843 -
1622930759.1775565-CDS-C-linearis_contig9:3200377..32004791622930759.1775565-CDS-C-linearis_contig9:3200377..3200479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3200378..3200479 -
1690881234.7494693-CDS-C-linearis_contig9:3200377..32004791690881234.7494693-CDS-C-linearis_contig9:3200377..3200479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3200378..3200479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.1972075-UTR-C-linearis_contig9:3200479..32007021622930759.1972075-UTR-C-linearis_contig9:3200479..3200702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3200480..3200702 -
1690881234.7600152-UTR-C-linearis_contig9:3200479..32007021690881234.7600152-UTR-C-linearis_contig9:3200479..3200702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3200480..3200702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16704.1

>prot_C-linearis_contig9.16704.1 ID=prot_C-linearis_contig9.16704.1|Name=mRNA_C-linearis_contig9.16704.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=298bp
MLASATEVEVEIHVPDDVSTFFGVTWAQDPRQEKIFIKAFPRGSDGRRGI
LEPTGLVEINDCLTAINGVPLDKSSDLREVMASIRAAKSPLSLRFARYPP
PRLCSSSPSSSSSSLFSASAVPALASPAGTDSLGGSGSSVGSAYAAGARA
RAGTGDTKNREAADPELDDILNSALVLGLGERVAGIQKRNAQLLQEVDRI
GRAAADKRQQGVERVASAAASLTAAGTKLLPQQALQLLSAARQDAVALCG
AMARLNDLLAARERAQMARRRALEQEDWRGRGAGGGLSSGGGGGGDGG
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mRNA from alignment at C-linearis_contig9:3198417..3200702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16704.1 ID=mRNA_C-linearis_contig9.16704.1|Name=mRNA_C-linearis_contig9.16704.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2286bp|location=Sequence derived from alignment at C-linearis_contig9:3198417..3200702- (Chordaria linearis ClinC8C monoicous)
GGCTGCTTCTCTCTTGCTCGCTGCTGTCTTGCCCGGCGGTGTTGTCGGCA
TCTCATCCTCTCTGCTGCGTGGCGGCACGATTTGTCACTGGGAAATTGCA
GTTGCGTGAAGTGAACCAGCTGGTCGGCAGTGGAGAGCGTGAAACCAACA
AGCTTGCTCCTTGGGCGCTCTCCCTGACACTGCTGTGCGTGGCTTTACGC
TCTTCGTGCCCGCCGAAAGCTCAATGCTTGCCTCCGCCACCGAGGTGGAG
GTGGAGATTCACGTGCCGGATGACGTGTCGACGTTCTTCGGGGTCACGTG
GGCGCAGGACCCACGACAAGAAAAGGTGTGCGCTGTGCGGAGAAACACAC
ACATGATTTCAACCCAACTGTTGGGCCCTCTCTGAGCATGTAGATGACCC
GTGCCTACTCTGTAGATGCGCTAGCTCGGGTGTTGCTGTGACCGCTAACT
TTTTACTCTAGTGCGCACGATACCGCTGTTTTTCGCAGACTTGATCCAGC
GGGTAGATCGTAGCGTGGCCGTGCCGTTGGTTGATCCGCTGGTGACCGTG
GATTTCAATTCCCTGATATTCGTGGTGTCTCTCGAAAATACAGCTGTACC
ACGGGTGTGTTCTTGTTATGTTTTCCGACCGTCAAAGCTGCGGCTTAACT
CACAGCCATTGCAGCGGACACGCCTGGTTTTTGTGGGTGTAATGCAGCCT
TGATCGGGTGCGCCGCAAAGCCGCCGCAACATCTCCGCTACTTGCCCGCG
CTCCCACCACCTTTGGACTTCTGACGACAATAACCCATCATCCCTTCCGC
GGCTCGGCGGCTCTCCTCGTCTGCACCGTTTCGCAACGAATCGGACCAAA
ACCGACCAGATCTTCATCAAGGCCTTTCCGCGAGGGTCTGACGGAAGACG
GGGCATTTTGGAGCCCACCGGGCTGGTCGAAATCAACGACTGCCTCACCG
CGATCAACGGCGTCCCACTCGACAAGTCCAGCGACCTGCGCGAGGTAATG
GCCAGCATCCGCGCCGCGAAGTCGCCGCTGTCTCTCCGGTTCGCGCGGTA
CCCCCCGCCGCGTCTATGCTCTTCCTCTCCCTCCTCTTCCTCCTCGTCCC
TCTTCTCTGCTTCTGCCGTGCCCGCTTTAGCTTCGCCGGCCGGAACTGAC
TCTCTGGGCGGCAGCGGCAGCAGCGTCGGCAGCGCGTATGCCGCGGGTGC
GAGGGCAAGAGCAGGGACAGGGGACACCAAGAATCGAGAAGCGGCGGATC
CCGAGCTCGACGATATCCTGAACAGCGCTCTGGTGCTAGGGCTCGGGGAA
CGGGTGGCCGGCATCCAAAAACGGAACGCGCAGCTGCTCCAAGAGGTGGA
CCGCATCGGGCGAGCAGCCGCGGATAAGCGGCAGGTGCGTTCTGTCTGTA
CATGCTCAAAGTCACACGCAAACGCGTTGCGGAATTACCCCTCGCGACCT
GGATCGTGATCGTTGCTCGTCTGGAGGTATGCAGTCATTTTTGTCGTCTT
GATTCGAGCACGGGCAGTTGTACGGCAGTCGGAGATGTACAGGAGACAGA
TCGCGGAGGTATTGGTGGTTACCGTGACAACAGCGCACCTGTTGCGGTGC
AGAGTGTGCTCTCTGGCCTAGCTCTGGCCTAGCCTTTGTTTTTTCTGCTC
ACACACTCGGTTTCGACGATGCGATAACTCTGAGTTCTTGTGGGCTTTCT
TTGAGTGTAATTTACGCCCCTTCGCGCTTTGTCTTGGTGCATTCGCTCGT
TCTGCACCGTCCTGGCGGCGTCTTAAATATGTAGTCGCACCGCAGCTCCG
AGGGAAGAAAGAAGGAGCGCACGTGATAACATCCGTACCCGTGCAAGAGA
GTACCTCACCCGTTACGTTGCACGCGAAATCCTCCAGACAGACTTTCGTG
CCCCGGATGTGTCAATATGGCATCCTTAGTCTATGCTTGGTATTTACTGT
GCGCGCTTCCTTTCCCGTGTTTCGTTGTGCCGTCTGCGCATTTTGGGGCT
CCTCTGTGACTCTTTCGAGCAGGGGGTAGAGAGAGTCGCGTCCGCGGCGG
CCTCGCTGACGGCGGCGGGGACAAAGCTCCTCCCGCAGCAGGCGCTGCAG
CTTCTTTCGGCCGCGAGACAGGACGCAGTAGCTCTCTGCGGGGCGATGGC
ACGGCTGAACGATCTGCTTGCGGCGAGAGAGAGGGCGCAGATGGCGAGGC
GGCGTGCACTCGAGCAGGAGGACTGGAGAGGTAGAGGGGCAGGGGGGGGG
TTGTCGAGCGGTGGTGGTGGTGGTGGTGATGGTGGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3198417..3200702-

>mRNA_C-linearis_contig9.16704.1 ID=mRNA_C-linearis_contig9.16704.1|Name=mRNA_C-linearis_contig9.16704.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at C-linearis_contig9:3198417..3200702- (Chordaria linearis ClinC8C monoicous)
ATGCTTGCCTCCGCCACCGAGGTGGAGGTGGAGATTCACGTGCCGGATGA
CGTGTCGACGTTCTTCGGGGTCACGTGGGCGCAGGACCCACGACAAGAAA
AGATGCTTGCCTCCGCCACCGAGGTGGAGGTGGAGATTCACGTGCCGGAT
GACGTGTCGACGTTCTTCGGGGTCACGTGGGCGCAGGACCCACGACAAGA
AAAGATCTTCATCAAGGCCTTTCCGCGAGGGTCTGACGGAAGACGGGGCA
TTTTGGAGCCCACCGGGCTGGTCGAAATCAACGACTGCCTCACCGCGATC
AACGGCGTCCCACTCGACAAGTCCAGCGACCTGCGCGAGGTAATGGCCAG
CATCCGCGCCGCGAAGTCGCCGCTGTCTCTCCGGTTCGCGCGGTACCCCC
CGCCGCGTCTATGCTCTTCCTCTCCCTCCTCTTCCTCCTCGTCCCTCTTC
TCTGCTTCTGCCGTGCCCGCTTTAGCTTCGCCGGCCGGAACTGACTCTCT
GGGCGGCAGCGGCAGCAGCGTCGGCAGCGCGTATGCCGCGGGTGCGAGGG
CAAGAGCAGGGACAGGGGACACCAAGAATCGAGAAGCGGCGGATCCCGAG
CTCGACGATATCCTGAACAGCGCTCTGGTGCTAGGGCTCGGGGAACGGGT
GGCCGGCATCCAAAAACGGAACGCGCAGCTGCTCCAAGAGGTGGACCGCA
TCGGGCGAGCAGCCGCGGATAAGCGGCAGATCTTCATCAAGGCCTTTCCG
CGAGGGTCTGACGGAAGACGGGGCATTTTGGAGCCCACCGGGCTGGTCGA
AATCAACGACTGCCTCACCGCGATCAACGGCGTCCCACTCGACAAGTCCA
GCGACCTGCGCGAGGTAATGGCCAGCATCCGCGCCGCGAAGTCGCCGCTG
TCTCTCCGGTTCGCGCGGTACCCCCCGCCGCGTCTATGCTCTTCCTCTCC
CTCCTCTTCCTCCTCGTCCCTCTTCTCTGCTTCTGCCGTGCCCGCTTTAG
CTTCGCCGGCCGGAACTGACTCTCTGGGCGGCAGCGGCAGCAGCGTCGGC
AGCGCGTATGCCGCGGGTGCGAGGGCAAGAGCAGGGACAGGGGACACCAA
GAATCGAGAAGCGGCGGATCCCGAGCTCGACGATATCCTGAACAGCGCTC
TGGTGCTAGGGCTCGGGGAACGGGTGGCCGGCATCCAAAAACGGAACGCG
CAGCTGCTCCAAGAGGTGGACCGCATCGGGCGAGCAGCCGCGGATAAGCG
GCAGCAGGGGGTAGAGAGAGTCGCGTCCGCGGCGGCCTCGCTGACGGCGG
CGGGGACAAAGCTCCTCCCGCAGCAGGCGCTGCAGCTTCTTTCGGCCGCG
AGACAGGACGCAGTAGCTCTCTGCGGGGCGATGGCACGGCTGAACGATCT
GCTTGCGGCGAGAGAGAGGGCGCAGATGGCGAGGCGGCGTGCACTCGAGC
AGGAGGACTGGAGAGGTAGAGGGGCAGGGGGGGGGTTGTCGAGCGGTGGT
GGTGGTGGTGGTGATGGTGGCCAGGGGGTAGAGAGAGTCGCGTCCGCGGC
GGCCTCGCTGACGGCGGCGGGGACAAAGCTCCTCCCGCAGCAGGCGCTGC
AGCTTCTTTCGGCCGCGAGACAGGACGCAGTAGCTCTCTGCGGGGCGATG
GCACGGCTGAACGATCTGCTTGCGGCGAGAGAGAGGGCGCAGATGGCGAG
GCGGCGTGCACTCGAGCAGGAGGACTGGAGAGGTAGAGGGGCAGGGGGGG
GGTTGTCGAGCGGTGGTGGTGGTGGTGGTGATGGTGGC
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