prot_C-linearis_contig9.16697.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16697.1
Unique Nameprot_C-linearis_contig9.16697.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length404
Homology
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 1.650e-98
Identity = 194/294 (65.99%), Postives = 215/294 (73.13%), Query Frame = 0
Query:   59 AHRSRAALLGLSPNALQPGKLRGGGCRLMMATEPAEXXXXXXXXXXXXXXXXXXXXXXXXXPVPEAEGVVAEEEQGEGAPVEEGEETAGDGEIHVVAEREEDKXXXXXX------ADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 346
            A R+R   L LSP AL+    R  G  LMMA EP+E      XXXXXXXXXXX         + E E  V +E  G            GD E  VVAE  E K   XXX       DPMAEVKQQIKDLEKEL+ EEN+LRD QDS+QEKGQMGFLRMAAQVDNFRK+SG GTGDYEADAKAAVL AMLPAFEPF AA++ L   TE EVK+N SYQALYRQLKD +TKIGATDFFGVVGEKF Y+RHEKASEEH+P+MKEG+I+KC SPG+ELKKNVIRKAVCV+SLGPEK+E
Sbjct:   13 AQRTRGTPL-LSPGALRTSGYRERGVHLMMAAEPSEDSVAEAXXXXXXXXXXXS--------ISEGEEAVEDEASG-----------GGDVETEVVAEEGEGKEGEXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKEE 286          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 8.230e-86
Identity = 131/161 (81.37%), Postives = 148/161 (91.93%), Query Frame = 0
Query:  186 LAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 346
            + EEN+LRD QDS+QEKGQMGFLRMAAQVDNFRK+SG GTGDYEADAKAAVL AMLPAFEPF AA++ L  ETE EVK+N SYQALYRQLKD +TK+GATDFFGVVGEKF Y+RHEKASEE++P+MKEG+I+KC SPG+ELKKNVIRKAVCV+SLGPEKKE
Sbjct:    1 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKE 161          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A835ZD01_9STRA (GrpE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD01_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.130e-26
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 0
Query:  216 NFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDV---LKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEK 344
            N+RK   +     +A+A A VL +  P  E F A  D    LK ETE E  FN++YQALYRQL D YTK+G TDFFGV GE +   RHEK  E+H+ I + G +L+C + G EL   VIRKA  V SLGPEK
Sbjct:   93 NYRKRRNLDQKKLQAEAMARVLRSFEPVLEAFEAVVDGETDLKLETEQEQMFNSNYQALYRQLADVYTKLGVTDFFGVQGETYDGIRHEKVGEQHADI-RAGAVLECLAKGNELSGGVIRKAKVVTSLGPEK 223          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S3XS89_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS89_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 4.040e-17
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 0
Query:  174 VKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPA---FEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLG 341
            ++++  DLEK+L A E K ++  D++ E G+ G++R AA VDN+++         +  + A  LT  +P    FE    A D   T  E E K   SY ALY QL   + K+G   +   VGE ++  RHEK  E  S   K+G +++  +PG+EL  ++IR A  V+S G
Sbjct:   97 LQKEFDDLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATP-EGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGSIIRPARVVVSAG 265          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S4D635_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D635_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 1.410e-16
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 0
Query:  174 VKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPA---FEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLG 341
            ++++  DLEK+L A E K ++  D++ E G+ G++R AA VDN+++         +  + A  LT  +P    FE    A D   T  E E K   SY ALY QL   + K+G   +   VGE ++  RHEK  E  S   K+G +++  +PG+EL   +IR A  V+S G
Sbjct:  195 LQKEFDDLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATP-EGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGTIIRPARVVVSAG 363          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S2V060_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V060_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.320e-11
Identity = 57/204 (27.94%), Postives = 103/204 (50.49%), Query Frame = 0
Query:  148 DGEIHVVAEREEDKXXXXXXADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLK-TE--TENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKF------AYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGP 342
            DG+     E + ++      ADP+AE+KQQI+               ++  I + G+ G++ +AA+ DN++++S          A A V++  +P  + F A K+  + TE  +E+ +K + +YQAL RQ+   +  +GA+ F   VG +       A S  E A+++     K+GM+++    G E+   +IR A CV+ + P
Sbjct:   77 DGDEAAEVEAKPEEPEDAEEADPLAELKQQIEXXXXXXXXXXXXXXISKRKILDNGKTGYVTIAAEADNYKRSSKSTIDSLGTRAMAEVISDFMPLVDKFEAIKETAEATENLSEDVLKIHRNYQALPRQMMTIFEGLGASSFDATVGSQIDPIKNVASSTREPANDKE----KDGMVVEALKSGFEINGVIIRPASCVMCVVP 276          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A835RKU0_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RKU0_VANPL)

HSP 1 Score: 73.6 bits (179), Expect = 9.900e-11
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 0
Query:  207 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 346
            FLR+ A + NFRK++      + AD +A V+  +LP  + F  AK   K ETE E K ++SYQ +Y+Q  +    +  +     VG  F  S HE  + E S   K G++++    G  L   V+R A+  +S GP  ++
Sbjct:  186 FLRINADLKNFRKSTEKDMLSFTADIRAEVVEHLLPLIDNFERAKHQTKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSEK 324          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A835RLD5_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RLD5_VANPL)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-10
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 0
Query:  207 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 346
            FLR+ A + NFRK++      + AD +A V+  +LP  + F  AK  +K ETE E K ++SYQ +Y+Q  +    +  +     VG  F  S HE  + E S   K G++++    G  L   V+R A+  +S GP  ++
Sbjct:  675 FLRINADLKNFRKSAEKDRLSFTADIRAEVVEHLLPLIDNFERAKHQMKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSEK 813          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A843TTK2_COLES (GrpE protein homolog n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TTK2_COLES)

HSP 1 Score: 69.7 bits (169), Expect = 1.450e-9
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 0
Query:  203 GQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKK 345
            G+  FLR+ A ++NFRK S      + +D +  ++ ++LP  + F  ++  +K ETE E K + SYQ +Y+Q  +    +        VG++F    HE      S   KEG I++  S G  L   ++R A   +S GP  K
Sbjct:  150 GKEKFLRVNADLENFRKRSEKDRLSFTSDIQRDLIESLLPIVDSFEQSRQQIKPETEKEKKLDTSYQGIYKQFVEILRSLRVA-VIETVGKQFDPLMHEAIGRVESHKYKEGFIVEEVSRGFLLGDQILRPAKVKVSAGPADK 291          
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: UPI001F0A7C9B (nucleotide exchange factor GrpE n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI001F0A7C9B)

HSP 1 Score: 68.6 bits (166), Expect = 1.880e-9
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  207 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAV 335
            F R+ A  DNFRK +     + E   K   ++AML   + F  A+  +K +TE E+  + SYQ +Y+QL DA+ K+G +      G++F  + HE    E +    EG ++     G  L + V+R A+
Sbjct:  111 FTRLTADFDNFRKRTAKEREELEVKVKCNTISAMLEVVDNFERARSQIKPQTEGEMAIHKSYQGVYKQLVDAFKKLGVSPMRSE-GQEFDPNLHEAVMREPTDQHPEGTVIDEFVRGYVLGERVLRHAM 238          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LSM3_ECTSI1.650e-9865.99Co-chaperone grpE family protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMN5_9PHAE8.230e-8681.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD01_9STRA1.130e-2650.76GrpE-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3XS89_HETAK4.040e-1735.09Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S4D635_HETAK1.410e-1635.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V060_9STRA5.320e-1127.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835RKU0_VANPL9.900e-1132.86GrpE protein homolog n=1 Tax=Vanilla planifolia Ta... [more]
A0A835RLD5_VANPL1.060e-1032.86GrpE protein homolog n=1 Tax=Vanilla planifolia Ta... [more]
A0A843TTK2_COLES1.450e-930.77GrpE protein homolog n=1 Tax=Colocasia esculenta T... [more]
UPI001F0A7C9B1.880e-931.78nucleotide exchange factor GrpE n=1 Tax=Leptolyngb... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..198
NoneNo IPR availablePANTHERPTHR21237:SF27GRPE PROTEIN HOMOLOGcoord: 32..347
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..403
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.545
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 155..280
e-value: 2.6E-5
score: 25.8
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 180..283
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 160..335
e-value: 3.5E-15
score: 56.1
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 32..347

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3076607..3079758 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16697.1mRNA_C-linearis_contig9.16697.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3076588..3079808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16697.1 ID=prot_C-linearis_contig9.16697.1|Name=mRNA_C-linearis_contig9.16697.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=404bp
MKGVALTPRAMAAATALPLMFLSATQCSTAFVLRASSLSRALVHDGERPT
TAPVAATTAHRSRAALLGLSPNALQPGKLRGGGCRLMMATEPAEEEEGVA
EDAAAAAAAAAAAAAADEPPVPEAEGVVAEEEQGEGAPVEEGEETAGDGE
IHVVAEREEDKEEEEEEADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQ
EKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAA
KDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRH
EKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKEEEEE
KTSDKDEGEEEAPAAPAPAEETGVDESGGAEGEEGAGAEAEAPPGEGEEA
AAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR000740GrpE