mRNA_C-linearis_contig9.16697.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16697.1
Unique NamemRNA_C-linearis_contig9.16697.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 3.430e-98
Identity = 194/294 (65.99%), Postives = 215/294 (73.13%), Query Frame = 2 
Query:  194 AHRSRAALLGLSPNALQPGKLRGGGCRLMMATEPAEXXXXXXXXXXXXXXXXXXXXXXXXXPVPEAEGVVAEEEQGEGAPVEEGEETAGDGEIHVVAEREEDKXXXXXX------ADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 1057
            A R+R   L LSP AL+    R  G  LMMA EP+E      XXXXXXXXXXX         + E E  V +E  G            GD E  VVAE  E K   XXX       DPMAEVKQQIKDLEKEL+ EEN+LRD QDS+QEKGQMGFLRMAAQVDNFRK+SG GTGDYEADAKAAVL AMLPAFEPF AA++ L   TE EVK+N SYQALYRQLKD +TKIGATDFFGVVGEKF Y+RHEKASEEH+P+MKEG+I+KC SPG+ELKKNVIRKAVCV+SLGPEK+E
Sbjct:   13 AQRTRGTPL-LSPGALRTSGYRERGVHLMMAAEPSEDSVAEAXXXXXXXXXXXS--------ISEGEEAVEDEASG-----------GGDVETEVVAEEGEGKEGEXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKEE 286
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 1.650e-85
Identity = 131/161 (81.37%), Postives = 148/161 (91.93%), Query Frame = 2 
Query:  575 LAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 1057
            + EEN+LRD QDS+QEKGQMGFLRMAAQVDNFRK+SG GTGDYEADAKAAVL AMLPAFEPF AA++ L  ETE EVK+N SYQALYRQLKD +TK+GATDFFGVVGEKF Y+RHEKASEE++P+MKEG+I+KC SPG+ELKKNVIRKAVCV+SLGPEKKE
Sbjct:    1 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKE 161
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S3XS89_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS89_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 4.970e-17
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 2 
Query:  539 VKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPA---FEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLG 1042
            ++++  DLEK+L A E K ++  D++ E G+ G++R AA VDN+++         +  + A  LT  +P    FE    A D   T  E E K   SY ALY QL   + K+G   +   VGE ++  RHEK  E  S   K+G +++  +PG+EL  ++IR A  V+S G
Sbjct:   97 LQKEFDDLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATP-EGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGSIIRPARVVVSAG 265
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S4D635_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D635_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 1.750e-16
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 2 
Query:  539 VKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPA---FEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLG 1042
            ++++  DLEK+L A E K ++  D++ E G+ G++R AA VDN+++         +  + A  LT  +P    FE    A D   T  E E K   SY ALY QL   + K+G   +   VGE ++  RHEK  E  S   K+G +++  +PG+EL   +IR A  V+S G
Sbjct:  195 LQKEFDDLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATP-EGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGTIIRPARVVVSAG 363
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A7S2V060_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V060_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.030e-11
Identity = 57/204 (27.94%), Postives = 103/204 (50.49%), Query Frame = 2 
Query:  461 DGEIHVVAEREEDKXXXXXXADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQEKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLK-TE--TENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKF------AYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGP 1045
            DG+     E + ++      ADP+AE+KQQI+               ++  I + G+ G++ +AA+ DN++++S          A A V++  +P  + F A K+  + TE  +E+ +K + +YQAL RQ+   +  +GA+ F   VG +       A S  E A+++     K+GM+++    G E+   +IR A CV+ + P
Sbjct:   77 DGDEAAEVEAKPEEPEDAEEADPLAELKQQIEXXXXXXXXXXXXXXISKRKILDNGKTGYVTIAAEADNYKRSSKSTIDSLGTRAMAEVISDFMPLVDKFEAIKETAEATENLSEDVLKIHRNYQALPRQMMTIFEGLGASSFDATVGSQIDPIKNVASSTREPANDKE----KDGMVVEALKSGFEINGVIIRPASCVMCVVP 276
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A835RKU0_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RKU0_VANPL)

HSP 1 Score: 73.6 bits (179), Expect = 1.130e-10
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 2 
Query:  638 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 1057
            FLR+ A + NFRK++      + AD +A V+  +LP  + F  AK   K ETE E K ++SYQ +Y+Q  +    +  +     VG  F  S HE  + E S   K G++++    G  L   V+R A+  +S GP  ++
Sbjct:  186 FLRINADLKNFRKSTEKDMLSFTADIRAEVVEHLLPLIDNFERAKHQTKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSEK 324
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A835RLD5_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RLD5_VANPL)

HSP 1 Score: 74.7 bits (182), Expect = 1.260e-10
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 2 
Query:  638 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKE 1057
            FLR+ A + NFRK++      + AD +A V+  +LP  + F  AK  +K ETE E K ++SYQ +Y+Q  +    +  +     VG  F  S HE  + E S   K G++++    G  L   V+R A+  +S GP  ++
Sbjct:  675 FLRINADLKNFRKSAEKDRLSFTADIRAEVVEHLLPLIDNFERAKHQMKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSEK 813
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A843TTK2_COLES (GrpE protein homolog n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TTK2_COLES)

HSP 1 Score: 69.7 bits (169), Expect = 1.630e-9
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 2 
Query:  626 GQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKK 1054
            G+  FLR+ A ++NFRK S      + +D +  ++ ++LP  + F  ++  +K ETE E K + SYQ +Y+Q  +    +        VG++F    HE      S   KEG I++  S G  L   ++R A   +S GP  K
Sbjct:  150 GKEKFLRVNADLENFRKRSEKDRLSFTSDIQRDLIESLLPIVDSFEQSRQQIKPETEKEKKLDTSYQGIYKQFVEILRSLRVA-VIETVGKQFDPLMHEAIGRVESHKYKEGFIVEEVSRGFLLGDQILRPAKVKVSAGPADK 291
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: UPI001F0A7C9B (nucleotide exchange factor GrpE n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI001F0A7C9B)

HSP 1 Score: 68.6 bits (166), Expect = 2.080e-9
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 2 
Query:  638 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAV 1024
            F R+ A  DNFRK +     + E   K   ++AML   + F  A+  +K +TE E+  + SYQ +Y+QL DA+ K+G +      G++F  + HE    E +    EG ++     G  L + V+R A+
Sbjct:  111 FTRLTADFDNFRKRTAKEREELEVKVKCNTISAMLEVVDNFERARSQIKPQTEGEMAIHKSYQGVYKQLVDAFKKLGVSPMRSE-GQEFDPNLHEAVMREPTDQHPEGTVIDEFVRGYVLGERVLRHAM 238
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BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Match: A0A2P6V674_9CHLO (Nucleotide release factor n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V674_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 3.340e-7
Identity = 37/133 (27.82%), Postives = 68/133 (51.13%), Query Frame = 2 
Query:  638 FLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAAKDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRHEKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLS 1036
            ++R+ A  +NFRK +       +A  +   ++ +LP  + F  AK  LK ETE E++ +N+YQ LY+Q+ + +  +G     GV G  F  + H+    E    + +G +L+    G  +   ++R A+  +S
Sbjct:   64 YVRLVADFENFRKRTASEKEAMKATVRGDTISELLPLVDNFELAKKQLKLETEGEIRVDNAYQGLYKQMVELFRGLGLEATPGV-GSPFDPNLHDGIMRELDNSVPDGTVLEEFRKGFMIGDKLVRPAMVKVS 195
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LSM3_ECTSI3.430e-9865.99Co-chaperone grpE family protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMN5_9PHAE1.650e-8581.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XS89_HETAK4.970e-1735.09Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S4D635_HETAK1.750e-1635.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V060_9STRA6.030e-1127.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835RKU0_VANPL1.130e-1032.86GrpE protein homolog n=1 Tax=Vanilla planifolia Ta... [more]
A0A835RLD5_VANPL1.260e-1032.86GrpE protein homolog n=1 Tax=Vanilla planifolia Ta... [more]
A0A843TTK2_COLES1.630e-930.77GrpE protein homolog n=1 Tax=Colocasia esculenta T... [more]
UPI001F0A7C9B2.080e-931.78nucleotide exchange factor GrpE n=1 Tax=Leptolyngb... [more]
A0A2P6V674_9CHLO3.340e-727.82Nucleotide release factor n=1 Tax=Micractinium con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3076588..3079808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue1.6e-81
Seed eggNOG ortholog2880.D8LSM3
Preferred namemge1
KEGG koko:K03687
Hectar predicted targeting categorychloroplast
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
EggNOG free text desc.adenyl-nucleotide exchange factor activity
EggNOG OGsCOG0576@1,KOG3003@2759
Ec32 ortholog descriptionco-chaperone grpE family protein
Ec32 orthologEc-09_002170.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons4
Model size1281
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16697.1prot_C-linearis_contig9.16697.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3076607..3079758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.2230394-UTR-C-linearis_contig9:3076587..30766061622930758.2230394-UTR-C-linearis_contig9:3076587..3076606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3076588..3076606 +
1690881234.254993-UTR-C-linearis_contig9:3076587..30766061690881234.254993-UTR-C-linearis_contig9:3076587..3076606Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3076588..3076606 +
1622930758.2931511-UTR-C-linearis_contig9:3079758..30798081622930758.2931511-UTR-C-linearis_contig9:3079758..3079808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3079759..3079808 +
1690881234.3117528-UTR-C-linearis_contig9:3079758..30798081690881234.3117528-UTR-C-linearis_contig9:3079758..3079808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3079759..3079808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.2361434-CDS-C-linearis_contig9:3076606..30771431622930758.2361434-CDS-C-linearis_contig9:3076606..3077143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3076607..3077143 +
1690881234.2746627-CDS-C-linearis_contig9:3076606..30771431690881234.2746627-CDS-C-linearis_contig9:3076606..3077143Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3076607..3077143 +
1622930758.2503536-CDS-C-linearis_contig9:3078067..30782861622930758.2503536-CDS-C-linearis_contig9:3078067..3078286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3078068..3078286 +
1690881234.2845104-CDS-C-linearis_contig9:3078067..30782861690881234.2845104-CDS-C-linearis_contig9:3078067..3078286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3078068..3078286 +
1622930758.2618296-CDS-C-linearis_contig9:3078870..30790201622930758.2618296-CDS-C-linearis_contig9:3078870..3079020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3078871..3079020 +
1690881234.2931423-CDS-C-linearis_contig9:3078870..30790201690881234.2931423-CDS-C-linearis_contig9:3078870..3079020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3078871..3079020 +
1622930758.2756984-CDS-C-linearis_contig9:3079452..30797581622930758.2756984-CDS-C-linearis_contig9:3079452..3079758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3079453..3079758 +
1690881234.3025787-CDS-C-linearis_contig9:3079452..30797581690881234.3025787-CDS-C-linearis_contig9:3079452..3079758Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3079453..3079758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16697.1

>prot_C-linearis_contig9.16697.1 ID=prot_C-linearis_contig9.16697.1|Name=mRNA_C-linearis_contig9.16697.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=404bp
MKGVALTPRAMAAATALPLMFLSATQCSTAFVLRASSLSRALVHDGERPT
TAPVAATTAHRSRAALLGLSPNALQPGKLRGGGCRLMMATEPAEEEEGVA
EDAAAAAAAAAAAAAADEPPVPEAEGVVAEEEQGEGAPVEEGEETAGDGE
IHVVAEREEDKEEEEEEADPMAEVKQQIKDLEKELLAEENKLRDTQDSIQ
EKGQMGFLRMAAQVDNFRKTSGVGTGDYEADAKAAVLTAMLPAFEPFVAA
KDVLKTETENEVKFNNSYQALYRQLKDAYTKIGATDFFGVVGEKFAYSRH
EKASEEHSPIMKEGMILKCTSPGVELKKNVIRKAVCVLSLGPEKKEEEEE
KTSDKDEGEEEAPAAPAPAEETGVDESGGAEGEEGAGAEAEAPPGEGEEA
AAA*
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mRNA from alignment at C-linearis_contig9:3076588..3079808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16697.1 ID=mRNA_C-linearis_contig9.16697.1|Name=mRNA_C-linearis_contig9.16697.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3221bp|location=Sequence derived from alignment at C-linearis_contig9:3076588..3079808+ (Chordaria linearis ClinC8C monoicous)
CGCCAAAAACGCAGGGAGCATGAAGGGTGTAGCGCTGACCCCAAGAGCTA
TGGCGGCCGCGACGGCTCTGCCCCTGATGTTCTTATCGGCAACGCAATGC
AGCACGGCCTTCGTGCTGCGAGCGTCGTCACTCAGCAGAGCTTTGGTGCA
CGACGGAGAGCGGCCCACAACCGCTCCTGTTGCTGCTACCACCGCCCACC
GATCGCGAGCGGCGCTGCTGGGCCTCTCACCCAACGCCCTGCAGCCCGGC
AAGCTGCGAGGGGGTGGATGTAGGCTGATGATGGCGACGGAGCCAGCAGA
GGAGGAGGAGGGCGTTGCCGAGGATGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGACGAGCCGCCCGTTCCCGAGGCAGAGGGAGTA
GTTGCTGAGGAAGAGCAAGGGGAGGGAGCCCCGGTAGAGGAGGGAGAAGA
GACGGCGGGAGATGGAGAAATACATGTGGTAGCGGAGAGAGAGGAGGATA
AGGAGGAAGAGGAGGAGGAGGCGGACCCGATGGCAGAGGTCAAGCAACAA
ATCAAGGTTGGTTTTGGGTGACTCGAAAACTTTCATATCTGGCGCGCGCA
TGAGCTGCTACTGCTGCTGTGTACCGGTCGTGACATCCACTGCCGCTCCG
GAATAGGGGTGTGTTTAGAGGGGCGAGAAGAGATACGCGATTTAGGAGTC
AAGTTGCCATCCGTGACAAAACGGAGCGCCTGCTCTAGGTTCGGTGTAGC
TTGTGCGACTGCTGCTGATATCAGCGCCGCACGCGTGCCATGAGGTATTT
TTTTTTTCTCGTTTTTTCTGGAAACATGTTACCAAGCCTCCCGTGCTGCG
GTTTCTTCGTCGACGCCGGTTTGTGTCCAACCAGGCTGTACTTACCATCG
AAAAATCTCCATCCTGTTTCTGCAGCAGAGCTAGAGCTAGTTTGTGGTCA
TTTTTCAGCATTCGTGGAAAGCTGCGTGTTCAAACAGCAGTGGGTTCGGT
TTCCTTGGAATTTGATTAGTCTACAGCAGTAGACGGGGAGGGAGCGAGAT
AGGAGATAGGGCGGGATAACGAACAAGACCAACAAGCATTACGGACGGTG
CGTTGCACACACAAGCAGCCAGCGAAGCTGCCACCCGGTGCCGTACGAGC
ACGAAGATCTAGAATGACGGGGGGTATGTTGCGTGACCTATCGCGGCACC
ATGCTCGGGGAGCAGCCTATTTCAATCCTGGCGTGAGCTGTATCGCCACC
ACACTATAATAGTTAATATTTTGCTCGGTGTCTATCGTAGACATGATACC
ACTGCTGCGTGTTTAGTGTTCTTTCTCTCAGCCCCAATGTCGGTGCGCAA
CGCAAGTCAGCTTTCTGCGGAGCCTTGAACGCTAAGCTGTACATAGCCGA
AAACCCGGTTAACCCTTTTTGCAATAAATGCTGGCGCCGTACTCTCCGCT
CGTCTCCCCGCCCTAAAATTCCATGTTCAGGACCTCGAGAAGGAACTCCT
GGCAGAGGAGAACAAGCTGAGGGACACGCAAGACTCAATCCAGGAAAAGG
GTCAGATGGGCTTCTTGAGGATGGCGGCCCAGGTGGACAACTTCCGCAAG
ACCAGCGGAGTGGGCACCGGGGACTACGAGGCGGACGCTAAGGCGGCCGT
GCTGACGGCGATGCTGCCGGCGTTCGAGCCTTTCGTGGCTGCCAAAGATG
TGCGTGCCCGTGCAACCTATTTTTTGGGATGCGGGAAGCAGTGGTCTACG
CAGGTTTTACGGTAGAAGATGAAGTATGCAATTGGCGGAATGGGGGGGGG
GTTCAGGGGTTAGGGTTAGGGTTACGGAACCCCCCTCTCTATTTCTAACA
TAAACTTTCTTCGCGTCGGCAAGTCCGCGGGAAGAGGCTCCCGTCGTGAG
AGGGTAGCAATGTCAAGTCTGTTTGCGTGACGCAGTTCTTCGCGGTGGCG
GTTTATTTGAGAGAAGAGGTGGTCAAGATGGTACTCCTGACGGCGTTTGA
TCCTCCCGAGATACATATCTGACAGGGCATGGCCGGGTTGGTGTAGCACC
GTCCGTAGTGGTCTGTGTGCGTATCGGCACGCACGCCCTTCGTCAGGATC
GGTTACCTGCAACGATAGACGCAGGCTGCGTTCATGCTGTGCCCTTGCGG
CTCGTTGCTATTTCCGGCGCCTCTGCCCGGACTAGCCCGTATACTACATC
GATGCCTGATTGCTGGCTTTGGTTTGACATTGTGACGGCGTGAAATTGTG
TGTTTGGGTGTATGTGTGTTTTGTCAATGGCAGGTACTGAAAACCGAGAC
CGAAAACGAGGTGAAGTTCAACAACAGCTACCAGGCGCTGTACCGGCAGC
TCAAGGACGCCTACACCAAGATCGGCGCGACCGACTTCTTCGGCGTTGTG
GGAGAGAAGTTCGCCTACAGCCGACACGAGAAGGTGCGTCACGCGTGAAG
CGTGGGCTCGATGGCCAGTAGTTTTTTGTTGCGGGCTCACTCTGCTCGCT
GGGTTGGGGTGGATAGCTGCAGATGCGTCAGTCGACGCCGGAGATCACGC
GCAGAAATACGTGACCAGACGACAAAGAAGTTGAAGCATTCTGGTTTCAC
TTATGCAATGCAGTGTGGCGTTGGGGACGGGACAACGTGAGGGAGCTGGT
TGCTTCGGCGCGCGAGAGTCCATTCGATACTCCACTTGCAGCGGACGACC
AAGACGAGAGCTGCCCATCTTGGCCCTCCTCCGCCTCCTCTTGACAAGCA
AGTATGTAGTAACACCAACCTCGATCTTGATCACGCGACGCCAGCATTAA
CCTTCCCGCCCCACCCCCCCCGTCCCCTTGTGGACTACTCTCTCTTTCGC
TACACCTCTTGGAAGGCTTCGGAGGAGCACAGCCCCATCATGAAGGAGGG
GATGATCCTCAAGTGCACCTCCCCGGGAGTCGAGCTGAAGAAGAACGTCA
TCCGGAAAGCCGTGTGCGTCTTGTCGCTCGGCCCCGAAAAGAAGGAGGAG
GAGGAGGAAAAAACTTCCGACAAGGACGAGGGCGAAGAGGAAGCACCGGC
AGCACCAGCACCAGCGGAAGAGACGGGCGTCGACGAATCCGGTGGCGCAG
AAGGAGAGGAGGGGGCGGGAGCAGAGGCTGAGGCACCGCCGGGAGAGGGG
GAAGAGGCGGCAGCCGCATGATGAATTGACGGTTGATCGTATCCTCGATC
TACTGCTGTATCGTGTGGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3076588..3079808+

>mRNA_C-linearis_contig9.16697.1 ID=mRNA_C-linearis_contig9.16697.1|Name=mRNA_C-linearis_contig9.16697.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2424bp|location=Sequence derived from alignment at C-linearis_contig9:3076588..3079808+ (Chordaria linearis ClinC8C monoicous)
ATGAAGGGTGTAGCGCTGACCCCAAGAGCTATGGCGGCCGCGACGGCTCT
GCCCCTGATGTTCTTATCGGCAACGCAATGCAGCACGGCCTTCGTGCTGC
GAGCGTCGTCACTCAGCAGAGCTTTGGTGCACGACGGAGAGCGGCCCACA
ACCGCTCCTGTTGCTGCTACCACCGCCCACCGATCGCGAGCGGCGCTGCT
GGGCCTCTCACCCAACGCCCTGCAGCCCGGCAAGCTGCGAGGGGGTGGAT
GTAGGCTGATGATGGCGACGGAGCCAGCAGAGGAGGAGGAGGGCGTTGCC
GAGGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGA
CGAGCCGCCCGTTCCCGAGGCAGAGGGAGTAGTTGCTGAGGAAGAGCAAG
GGGAGGGAGCCCCGGTAGAGGAGGGAGAAGAGACGGCGGGAGATGGAGAA
ATACATGTGGTAGCGGAGAGAGAGGAGGATAAGGAGGAAGAGGAGGAGGA
GGCGGACCCGATGGCAGAGGTCAAGCAACAAATCAAGATGAAGGGTGTAG
CGCTGACCCCAAGAGCTATGGCGGCCGCGACGGCTCTGCCCCTGATGTTC
TTATCGGCAACGCAATGCAGCACGGCCTTCGTGCTGCGAGCGTCGTCACT
CAGCAGAGCTTTGGTGCACGACGGAGAGCGGCCCACAACCGCTCCTGTTG
CTGCTACCACCGCCCACCGATCGCGAGCGGCGCTGCTGGGCCTCTCACCC
AACGCCCTGCAGCCCGGCAAGCTGCGAGGGGGTGGATGTAGGCTGATGAT
GGCGACGGAGCCAGCAGAGGAGGAGGAGGGCGTTGCCGAGGATGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACGAGCCGCCCGTT
CCCGAGGCAGAGGGAGTAGTTGCTGAGGAAGAGCAAGGGGAGGGAGCCCC
GGTAGAGGAGGGAGAAGAGACGGCGGGAGATGGAGAAATACATGTGGTAG
CGGAGAGAGAGGAGGATAAGGAGGAAGAGGAGGAGGAGGCGGACCCGATG
GCAGAGGTCAAGCAACAAATCAAGGACCTCGAGAAGGAACTCCTGGCAGA
GGAGAACAAGCTGAGGGACACGCAAGACTCAATCCAGGAAAAGGGTCAGA
TGGGCTTCTTGAGGATGGCGGCCCAGGTGGACAACTTCCGCAAGACCAGC
GGAGTGGGCACCGGGGACTACGAGGCGGACGCTAAGGCGGCCGTGCTGAC
GGCGATGCTGCCGGCGTTCGAGCCTTTCGTGGCTGCCAAAGATGACCTCG
AGAAGGAACTCCTGGCAGAGGAGAACAAGCTGAGGGACACGCAAGACTCA
ATCCAGGAAAAGGGTCAGATGGGCTTCTTGAGGATGGCGGCCCAGGTGGA
CAACTTCCGCAAGACCAGCGGAGTGGGCACCGGGGACTACGAGGCGGACG
CTAAGGCGGCCGTGCTGACGGCGATGCTGCCGGCGTTCGAGCCTTTCGTG
GCTGCCAAAGATGTACTGAAAACCGAGACCGAAAACGAGGTGAAGTTCAA
CAACAGCTACCAGGCGCTGTACCGGCAGCTCAAGGACGCCTACACCAAGA
TCGGCGCGACCGACTTCTTCGGCGTTGTGGGAGAGAAGTTCGCCTACAGC
CGACACGAGAAGGTACTGAAAACCGAGACCGAAAACGAGGTGAAGTTCAA
CAACAGCTACCAGGCGCTGTACCGGCAGCTCAAGGACGCCTACACCAAGA
TCGGCGCGACCGACTTCTTCGGCGTTGTGGGAGAGAAGTTCGCCTACAGC
CGACACGAGAAGGCTTCGGAGGAGCACAGCCCCATCATGAAGGAGGGGAT
GATCCTCAAGTGCACCTCCCCGGGAGTCGAGCTGAAGAAGAACGTCATCC
GGAAAGCCGTGTGCGTCTTGTCGCTCGGCCCCGAAAAGAAGGAGGAGGAG
GAGGAAAAAACTTCCGACAAGGACGAGGGCGAAGAGGAAGCACCGGCAGC
ACCAGCACCAGCGGAAGAGACGGGCGTCGACGAATCCGGTGGCGCAGAAG
GAGAGGAGGGGGCGGGAGCAGAGGCTGAGGCACCGCCGGGAGAGGGGGAA
GAGGCGGCAGCCGCATGAGCTTCGGAGGAGCACAGCCCCATCATGAAGGA
GGGGATGATCCTCAAGTGCACCTCCCCGGGAGTCGAGCTGAAGAAGAACG
TCATCCGGAAAGCCGTGTGCGTCTTGTCGCTCGGCCCCGAAAAGAAGGAG
GAGGAGGAGGAAAAAACTTCCGACAAGGACGAGGGCGAAGAGGAAGCACC
GGCAGCACCAGCACCAGCGGAAGAGACGGGCGTCGACGAATCCGGTGGCG
CAGAAGGAGAGGAGGGGGCGGGAGCAGAGGCTGAGGCACCGCCGGGAGAG
GGGGAAGAGGCGGCAGCCGCATGA
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