prot_C-linearis_contig9.16690.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig9.16690.1
Unique Name	prot_C-linearis_contig9.16690.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	112

Homology

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BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Match: D8LSL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSL7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.220e-35
Identity = 69/113 (61.06%), Postives = 80/113 (70.80%), Query Frame = 0

Query:    1 MVRLVEGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVIAVFAALRFGVPGLVFVGILAGASHYGCNDEGNGGSGGRR--RPFSLGSNVRGMGDLPRPPPSS 111
            MVRLVEGQIV++DE G   GG+L  +LRCR   TIN LGFR+PLYWSCVI VFA L+FG+ GL+FV   AGAS Y CN             RPF+ GSNVRG+ DLP+PPPSS
Sbjct:    1 MVRLVEGQIVAEDEDGA--GGWLRGLLRCR---TINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACNXXXXXXXXXXXXXRPFARGSNVRGISDLPKPPPSS 108

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BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Match: A0A7S2A9X7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9X7_TRICV)

HSP 1 Score: 48.9 bits (115), Expect = 4.620e-5
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 0

Query:    6 EGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVIAVFAALRFGVPGLV-FVGILAGASHY---GCNDEGNGGSGGRRRPFSLGSNVRGMGDLPRPPP 109
            +G ++S+ E    P G L   L  R    ++  GF L      V+ V AAL  G  GL+ FV  L   S +     +++G GG  G  R  S G+N+RG+ DLP+PPP
Sbjct:   10 DGTLISEGEESAAPPGGL---LSLRSGQNVDAFGFNLEPRQFVVVLVLAALMLGGTGLLAFVFSLGAYSLFRRVASSEDGRGG--GEHR--SAGANIRGVKDLPKPPP 110

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot

BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSL7_ECTSI	5.220e-35	61.06	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2A9X7_TRICV	4.620e-5	36.11	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 71..111
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..70
None	No IPR available	TMHMM	TMhelix		coord: 37..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig9	contig	C-linearis_contig9:3012830..3014360 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig9.16690.1	mRNA_C-linearis_contig9.16690.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig9 3012830..3014360 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig9.16690.1 ID=prot_C-linearis_contig9.16690.1|Name=mRNA_C-linearis_contig9.16690.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
MVRLVEGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVI
AVFAALRFGVPGLVFVGILAGASHYGCNDEGNGGSGGRRRPFSLGSNVRG
MGDLPRPPPSS*