mRNA_C-linearis_contig9.16690.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16690.1
Unique NamemRNA_C-linearis_contig9.16690.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Match: D8LSL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSL7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.220e-35
Identity = 69/113 (61.06%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 MVRLVEGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVIAVFAALRFGVPGLVFVGILAGASHYGCNDEGNGGSGGRR--RPFSLGSNVRGMGDLPRPPPSS 333
            MVRLVEGQIV++DE G   GG+L  +LRCR   TIN LGFR+PLYWSCVI VFA L+FG+ GL+FV   AGAS Y CN             RPF+ GSNVRG+ DLP+PPPSS
Sbjct:    1 MVRLVEGQIVAEDEDGA--GGWLRGLLRCR---TINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACNXXXXXXXXXXXXXRPFARGSNVRGISDLPKPPPSS 108
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BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Match: A0A7S2A9X7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9X7_TRICV)

HSP 1 Score: 48.9 bits (115), Expect = 4.620e-5
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:   16 EGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVIAVFAALRFGVPGLV-FVGILAGASHY---GCNDEGNGGSGGRRRPFSLGSNVRGMGDLPRPPP 327
            +G ++S+ E    P G L   L  R    ++  GF L      V+ V AAL  G  GL+ FV  L   S +     +++G GG  G  R  S G+N+RG+ DLP+PPP
Sbjct:   10 DGTLISEGEESAAPPGGL---LSLRSGQNVDAFGFNLEPRQFVVVLVLAALMLGGTGLLAFVFSLGAYSLFRRVASSEDGRGG--GEHR--SAGANIRGVKDLPKPPP 110
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSL7_ECTSI5.220e-3561.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2A9X7_TRICV4.620e-536.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3012830..3014360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002120.1
Exons3
Model size336
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16690.1prot_C-linearis_contig9.16690.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3012830..3014360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930756.1754487-CDS-C-linearis_contig9:3012829..30130401622930756.1754487-CDS-C-linearis_contig9:3012829..3013040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3012830..3013040 +
1690881233.182764-CDS-C-linearis_contig9:3012829..30130401690881233.182764-CDS-C-linearis_contig9:3012829..3013040Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3012830..3013040 +
1622930756.199668-CDS-C-linearis_contig9:3013805..30138771622930756.199668-CDS-C-linearis_contig9:3013805..3013877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3013806..3013877 +
1690881233.1925585-CDS-C-linearis_contig9:3013805..30138771690881233.1925585-CDS-C-linearis_contig9:3013805..3013877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3013806..3013877 +
1622930756.221631-CDS-C-linearis_contig9:3014307..30143601622930756.221631-CDS-C-linearis_contig9:3014307..3014360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3014308..3014360 +
1690881233.2017424-CDS-C-linearis_contig9:3014307..30143601690881233.2017424-CDS-C-linearis_contig9:3014307..3014360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3014308..3014360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16690.1

>prot_C-linearis_contig9.16690.1 ID=prot_C-linearis_contig9.16690.1|Name=mRNA_C-linearis_contig9.16690.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
MVRLVEGQIVSDDERGGCPGGFLARVLRCRGDTTINLLGFRLPLYWSCVI
AVFAALRFGVPGLVFVGILAGASHYGCNDEGNGGSGGRRRPFSLGSNVRG
MGDLPRPPPSS*
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mRNA from alignment at C-linearis_contig9:3012830..3014360+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16690.1 ID=mRNA_C-linearis_contig9.16690.1|Name=mRNA_C-linearis_contig9.16690.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1531bp|location=Sequence derived from alignment at C-linearis_contig9:3012830..3014360+ (Chordaria linearis ClinC8C monoicous)
ATGGTGCGCTTGGTGGAAGGGCAGATTGTCAGTGACGATGAAAGGGGCGG
TTGTCCGGGTGGGTTTCTTGCGAGGGTGCTGCGGTGTAGAGGTGACACCA
CAATCAACTTGCTCGGATTTCGCCTGCCTCTCTACTGGAGTTGCGTCATA
GCGGTCTTCGCGGCACTCCGCTTTGGTGTCCCGGGGCTGGTGTTTGTGGG
TATACTGGCAGGTGAGACAGAATATACTGTGTACGTGTGGTTTGAAAAGG
TCCGAATGATAAGCTTTGTTTTTGAATTGATGGTATGATGTGTGCGCAGC
CCGTCTTCCGTACTTCAACGTAACGAGAAGTTCCCAAACCGCTGCAGCGA
CCCTTGTGTTGTAGCGCTTGTGTGTAGAGGGAACGAAAGAGAGCAGCCCC
TGATTCGACACCTCTAGTGGAGGCACGCATAGAAAGAGGGAAGAGGAAGC
GTGCGACAACGTCAACAGCAGCTTGCTGCTGTGGCGGGTGCTTGTTGTGG
AGACGAAAAAGGGATTTTGTCATTTTGTCCGCTCACACTTTCTGCTTCTT
TGGTTTTGGACCCCGGGCCTGCCGCCGGGGGGCGCACGGTTGCCCAATAC
TCAACCCTTTTCTGACACAGGGGTGTTGCGCTAGCCGTATGACCTTGCAC
CTGGTGCAAGAGAGCTTTCTTTGTTGGCATTCCAAAGGATGCTCAAAAGC
AGTGACCTGGCGGGTGATCATTTATCTGCATACACTCCAGATTCCACATG
AGACTACTCCTGAATGCGTAAATTTAGCAAAATGCAAAATGTAGGTAACG
AGTTTCTTGAAAGTAAAGCTGCCTCCGAGGCCGCCGTTCGCCGACAACAA
GTTCTCGACCAGCTTTAATACTAAAGAGGGCTTAACGAGGATGACTTCGG
TTATTGAATACGTGAGACCCATGCTGTAACAACGTTTGATTCATGCTCTC
TCTTGTCTCCCTACTACTCATGGAAGGCGCCAGCCACTACGGCTGCAACG
ATGAGGGGAACGGTGGGAGCGGCGGCCGAAGACGACCGTTTTCGCTAGGT
GAATACTAGAACCGGGTAGAGGCGACTGTATGGGCGTTACATCGGGTTGG
AAATCAAAGCGACCACGAGAAACCTTAACCTTCTCAGTTCCAAAGTTCAA
GCAGGTGTTGCCAAAGTTATACTACGATATGTACGGTGCGGCAGGTGAAC
GCAAGACGCGTTGCGCGTACCAAGCTCCGGGGTCCTATCATACCGTTCTT
CTGTACGAGTTGTCCTAAACCGATGGTGTTCCTGTCGACATTCGTCGCAT
ACTTCTACCAACCGTTTCATAGTTGCCCTAGAGTGAAATAACTCCATGTG
GCCGAGGTGAGCGTGAGTTTGCCGTGTATCTGTACACACACTTCCACCGC
AGTTTTCTCCCCAACGCCTCGACCAACACCACGGCCATCCATCCCCACCA
CCACCGCGGTGTTTTTCTGTGCCGGCAGGGTCCAACGTCAGGGGCATGGG
AGACCTTCCGAGGCCTCCCCCCTCAAGCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:3012830..3014360+

>mRNA_C-linearis_contig9.16690.1 ID=mRNA_C-linearis_contig9.16690.1|Name=mRNA_C-linearis_contig9.16690.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig9:3012830..3014360+ (Chordaria linearis ClinC8C monoicous)
ATGGTGCGCTTGGTGGAAGGGCAGATTGTCAGTGACGATGAAAGGGGCGG
TTGTCCGGGTGGGTTTCTTGCGAGGGTGCTGCGGTGTAGAGGTGACACCA
CAATCAACTTGCTCGGATTTCGCCTGCCTCTCTACTGGAGTTGCGTCATA
GCGGTCTTCGCGGCACTCCGCTTTGGTGTCCCGGGGCTGGTGTTTGTGGG
TATACTGGCAGATGGTGCGCTTGGTGGAAGGGCAGATTGTCAGTGACGAT
GAAAGGGGCGGTTGTCCGGGTGGGTTTCTTGCGAGGGTGCTGCGGTGTAG
AGGTGACACCACAATCAACTTGCTCGGATTTCGCCTGCCTCTCTACTGGA
GTTGCGTCATAGCGGTCTTCGCGGCACTCCGCTTTGGTGTCCCGGGGCTG
GTGTTTGTGGGTATACTGGCAGGCGCCAGCCACTACGGCTGCAACGATGA
GGGGAACGGTGGGAGCGGCGGCCGAAGACGACCGTTTTCGCTAGGCGCCA
GCCACTACGGCTGCAACGATGAGGGGAACGGTGGGAGCGGCGGCCGAAGA
CGACCGTTTTCGCTAGGGTCCAACGTCAGGGGCATGGGAGACCTTCCGAG
GCCTCCCCCCTCAAGCTGAGGTCCAACGTCAGGGGCATGGGAGACCTTCC
GAGGCCTCCCCCCTCAAGCTGA
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