prot_C-linearis_contig9.16652.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16652.1
Unique Nameprot_C-linearis_contig9.16652.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length665
Homology
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BLAST of mRNA_C-linearis_contig9.16652.1 vs. uniprot
Match: D7FVG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG5_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.620e-43
Identity = 337/411 (82.00%), Postives = 366/411 (89.05%), Query Frame = 0 
Query:  254 GRGDAVARDVWMQQRLGLDDDAMAIMRETHMHVLKYRDREHLEPKLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNIHVATLEKKIDFLRGEEVNLTTVEIKRIVRNSPAILTFSIDENMRPKLEWLRERMGLDGDGIRKMLGQNARVLSLKAETIEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYNIEDNLEPTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASGKPLMYSLEKRWRARVARIRARGVTPCFGDHWKPIANRTPAKFDDWLETL 664
            G+     R  W+Q+RL L+D  +A M E +   L YR  E+LEPKL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      TL+KK+ FLRGEE+NL+ VE+KRIVRNSP+  TFS++ENMRPKL WLRERMGLD  GIRK++G++ RVL+LK ETIE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +Y++EDN+EPTL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GK L+YSLEKRW+ RVARIRA+GVTPCF DHWKPIANR+PAKFD+WL TL
Sbjct:  241 GKSTTEERGRWIQERLLLNDATLAKMMEFYPQCLSYRIVENLEPKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDKKLAFLRGEELNLSDVEVKRIVRNSPSFFTFSVEENMRPKLAWLRERMGLDAIGIRKLVGRSPRVLALKVETIERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYSVEDNIEPTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKALLYSLEKRWKPRVARIRAKGVTPCFHDHWKPIANRSPAKFDEWLTTL 651
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BLAST of mRNA_C-linearis_contig9.16652.1 vs. uniprot
Match: A0A6H5JCT3_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.480e-16
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:  382 LTTVEIKRIVRNSPAILTFSIDENMRPKLEWLRERMGLDGDGIRKMLGQNARVLSLKAETIEG 444
            +  VE+KRIVRNSP+  TFS++ENMRPKL WLRERMGLD  GIRK++G++ RVL+LK ETIEG
Sbjct:  481 MNQVEVKRIVRNSPSFFTFSVEENMRPKLAWLRERMGLDVIGIRKLVGRSPRVLALKVETIEG 543
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BLAST of mRNA_C-linearis_contig9.16652.1 vs. uniprot
Match: A0A6H5JDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.340e-5
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:  618 LMYSLEKRWRARVARIRARGVTPCFGDHWKPIANRTPAKFDDWLE 662
            LMYSL+KRWR RVA +R+  V P F  HW+P+A R    F  WLE
Sbjct:  562 LMYSLDKRWRPRVAHMRSLRVKPVFSAHWRPMATRDDESFGAWLE 606
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16652.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVG5_ECTSI4.620e-4382.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCT3_9PHAE2.480e-1669.84Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JDC9_9PHAE4.340e-555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 314..346
e-value: 0.0054
score: 25.9
coord: 534..566
e-value: 1.9
score: 17.5
coord: 351..381
e-value: 31.0
score: 13.5
coord: 608..639
e-value: 1900.0
score: 1.7
coord: 497..529
e-value: 3.8E-5
score: 33.1
coord: 425..456
e-value: 8.8
score: 15.3
coord: 461..492
e-value: 1200.0
score: 3.2
coord: 388..420
e-value: 2.4E-5
score: 33.8
coord: 571..603
e-value: 0.041
score: 23.0
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 524..624
e-value: 8.3E-11
score: 41.4
coord: 268..524
e-value: 1.1E-28
score: 100.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 505..639
e-value: 4.5E-22
score: 80.5
coord: 258..403
e-value: 2.1E-21
score: 78.3
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 556..630
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 556..630
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 473..556
coord: 283..418
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 283..418
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 473..556

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2381121..2386033 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16652.1mRNA_C-linearis_contig9.16652.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2380083..2386931 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16652.1 ID=prot_C-linearis_contig9.16652.1|Name=mRNA_C-linearis_contig9.16652.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=665bp
MYYVQSAGNSGAPPSIPNFWDAYPLLSEGAGAGGGGGGGAGGSSARLLRC
FLSLPSPSPSPLPLSPPCSTNEDRGVRRRRRGRNNANNKRMVHSVGARVQ
VAGNSSVGSSGSGAHGAVAAAAASSPEVLPEWLGGLGLDKEEEEDLVAAF
AALPEPPPPAAADAKLVKAARDLVVSMKKPKRAAGGAAGGGGRGGGRGGV
VAEDGDSGWGQEKKRHEGASEEGKITTVESAKRSSGSQEREGRGEAGDGG
RGLGRGDAVARDVWMQQRLGLDDDAMAIMRETHMHVLKYRDREHLEPKLD
WLQKELDLDAQALGKIVSSAPAILRLSIEGSIKPKLGWVRTTLGLDRRAT
AKLMVSWPSLFNIHVATLEKKIDFLRGEEVNLTTVEIKRIVRNSPAILTF
SIDENMRPKLEWLRERMGLDGDGIRKMLGQNARVLSLKAETIEGKLMWLE
GRLGMDREKAAKVVLTFPVMLSMALNTMDWKIVWLQQRLSLTRDQMMAMV
VKYPNLLSYNIEDNLEPTLKWLEEDLGVDTAVAGKLVLRQPRLLSANLED
NLKNKVPWMMQNLNLPRDVVLEVITGCPDVLNLSTERNLGPTIQFFYDEM
GASKDEVSEMVAASGKPLMYSLEKRWRARVARIRARGVTPCFGDHWKPIA
NRTPAKFDDWLETL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf