prot_C-linearis_contig9.16595.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16595.1
Unique Nameprot_C-linearis_contig9.16595.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1240
Homology
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 605 bits (1560), Expect = 2.950e-193
Identity = 749/1085 (69.03%), Postives = 799/1085 (73.64%), Query Frame = 0
Query:  160 GVPGPSVPAATAAVARGEVANGLNIFLQCMSRRRLKLAAEXXXXXXXXXXGVGAKEAAAPKQGGVPACNVFLRALGDARRIDDCVVAYEAMVACELRPTIVTYSTLISRAGTCRRVRLAERLFGEMLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDELNKKRPTNTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDPMVRSEAAADRG-KDVRDEPLSGSGEGAAALNGTRATQ-----------FSASVKVTT--AGQDA-------PADIAGGGAI--GAAASGGNEAGE--------AWRMDRKLENDLLKLFGQADQVDAAFKVLEGMVERRDSPDSETWLLLLNAVDTAGALDKAVELMERSRAEGQGSAVNELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVISEENTLRTRALQRTRILETRKSSPPSGRASTASASAATTAXXXXXXXXXXXXXXXQTLSSSSNGSA---PDTAEQEKGGEGQALLSPAGEPAAPETGPPSPAAAGAGAPGFATADSSVIAAWEASGRAKP---PRSAAAGXXXXXSSGRPEAATHHRPSXXXXXXXXXXXPXXXXXX-ALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTFARPTEVTHAHLMTASVMAGDFARALEVWRQQLSAGVAIGSRSTRAALAACGGAXXXXXXXXXXXXXXXXXXXXXXXXLLDLVNLCRANGLDSVAARIMRQRSKMAAATSRRKANVSRRRYTA 1206
            GVPGPSVP ATAAV RG++ANG+ +FL+CMSRRRLKLAA              A  AA+PKQGGVPACNVFLRALGDA RIDDCV AYEAM+AC+LRPTIVT+STLISRAG CRRVRLAER F EM  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LDELNK+RP +   XXXXX                                  VD   RS +    G  DV  +  +G G  A A+ GT +             FS +V +T   AG D        P  +A   AI  G A +G   +GE        AWRM+RKLE+DLL+LFGQADQVDAAFKVLEGMVERRDSPD ETWLLLLNAVDTAGALDKAVELMERSRAEG GS +NELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ISEENTLRTRALQRTR+LETR+S P S      +  ++  A                T   +++G A   P     ++G          G       G   PAAA   A   A  + SVIAAW +S   +    P + A G     SSGR EA+     +                   ALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEF+RALGVVRLMVDD EGGGLQPDAVTYTSLIKAAARA PPRVEEAEEIFATMQQRTNHFSTFARPTEVT+AHLM ASVMA D+ RALE+WRQQLSAGVA G RSTRAALAACGGA                        LLDLVNLCRANGL SVAARIMR+RSK  A T+RR++NVS RR +A
Sbjct:   44 GVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAA--------------ATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLDELNKRRPNSXXXXXXXXRNGDTNAAEFVREVGH------------------VDSDTRSSSGRGTGIGDVARKEAAGRGP-ATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPPMATAEAITRGGATTGEGGSGETATARGRGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVRRPAEGSSVAAAASAPGAPAQSSPLPSTAPGTTSGGASTLPRDGVDDRGKSLDVRADAVGTTKVVAGGGKGPAAAATRA--HAKEEPSVIAAWSSSSSGRGTAGPATKAGGVGGYASSGRSEASLRGPTADPTESSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRERSKTDATTNRRRSNVSMRRNSA 1093          
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.970e-37
Identity = 97/205 (47.32%), Postives = 124/205 (60.49%), Query Frame = 0
Query:  984 ALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTFARPTEVTHAHLMTASVMAGDFARALEVWRQQLSAGVAIGSRSTRAALAACGGAXXXXXXXXXXXXXXXXXXXXXXXXLLDLVNLCRANGLDSVAARIMRQRSKM 1188
            A DNLFRVFLVF EM+S+GV+PD  AYNAL+N+CA +G+ ERA+ V+R M +DE    L PDA+T+TSLIK AA A     + AEEIFA MQQRTNHFSTF RP+E T  H++TA++    F+R  E+W Q L+ G+A  SR+    L AC                           LL LV LC + G+   A  I+R RS +
Sbjct:  656 AADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCAAVGDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAAH--NADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLAEGLAPSSRTCSLVLGACRHQGDLTQALSVYGVMNTAGIRPDNRSLLSLVRLCESAGMADKARDIIRDRSSL 856          
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.210e-17
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 0
Query:  986 DNLFRVFLVFQEMR-SRGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYTSLIKAAA-RASPPRVEEAEEIFATMQQRTNHFSTFARPTEVTHAHLM 1096
            D+LFR++LVFQEM+ +  ++ D   YN L+N CA +G+ +RAL  +  M ++    G++P+ +TYTSLIKA A  +    +E AE IF  MQQR+NHFS + +P E+T+  LM
Sbjct:  173 DDLFRLYLVFQEMKYNPAIQLDTAVYNTLINACAGVGDIDRALETMTAMQEN----GIEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLM 281          
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-8
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  227 CNVFLRALGDARRIDDCVVAYEAMVACELRPTIVTYSTLISRAGTCRRVRLAERLFGEML 286
            CN  LR LGD   ++  V  +EAMVA  +RPT VTY TLISRAG  R+ +LA R++ +ML
Sbjct:    2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDML 61          
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 69.3 bits (168), Expect = 4.340e-8
Identity = 45/127 (35.43%), Postives = 60/127 (47.24%), Query Frame = 0
Query:  986 DNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIFATMQQRTNHFSTFARPTEVTHAHLMTASVMAGDFARALEVW 1112
            +NLFR+FLVFQEM+S GV+PDL AYN L++ C   GE E+A+ V                                     A      MQQRTNHF++   P+E+T   LM A+  A    R  E++
Sbjct:  642 ENLFRIFLVFQEMQSSGVQPDLCAYNTLLDACGRAGEVEKAMEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------MQQRTNHFASCVLPSELTFKQLMLANRNAYRLRRVFELF 762          
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Match: A0A7S2E620_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E620_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.210e-7
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 0
Query:  988 LFRVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYTSLIKAAARASPPRVEEAEEIF 1071
            L +VFLVFQEMR  G +PD   YN L+  CA  G+F RA  V+  ++D ++   L+P  V++  +++AA+R+        E+++
Sbjct:  757 LVKVFLVFQEMRDAGAKPDTACYNVLLGACARAGDFTRARDVLNKLMDSDD---LEPTHVSWREMLRAASRSKTASSHLVEQVW 837          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI2.950e-19369.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEM1_9STRA2.970e-3747.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XEC2_9STRA1.210e-1745.13Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2D4Z0_9EUKA3.200e-853.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0G4F8K7_VITBC4.340e-835.43Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2E620_9STRA7.210e-736.90Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1132..1155
e-value: 0.11
score: 12.8
coord: 366..394
e-value: 7.4E-5
score: 22.7
coord: 260..290
e-value: 0.0024
score: 18.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 292..339
e-value: 2.2E-12
score: 47.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 260..294
e-value: 5.3E-6
score: 24.3
coord: 297..328
e-value: 9.4E-7
score: 26.6
coord: 366..398
e-value: 1.7E-7
score: 28.9
coord: 400..434
e-value: 6.1E-9
score: 33.5
coord: 470..504
e-value: 1.1E-5
score: 23.3
coord: 1009..1036
e-value: 0.002
score: 16.2
coord: 330..363
e-value: 1.9E-6
score: 25.7
coord: 734..767
e-value: 5.2E-6
score: 24.3
coord: 1131..1158
e-value: 6.4E-6
score: 24.0
coord: 435..468
e-value: 1.1E-8
score: 32.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1034..1076
e-value: 0.0099
score: 15.9
coord: 994..1033
e-value: 0.0015
score: 18.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 503..533
score: 7.969
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 363..397
score: 11.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 12.145
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 731..765
score: 11.641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1045..1077
score: 9.01
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 801..836
score: 5.086
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 398..432
score: 12.452
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 258..292
score: 10.687
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 328..362
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 7.322
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 468..502
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 766..800
score: 9.525
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1123..1157
score: 9.35
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1088..1122
score: 7.256
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1006..1036
score: 8.67
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 433..467
score: 12.167
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 694..728
score: 7.377
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 659..693
score: 7.739
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 401..532
e-value: 9.4E-17
score: 61.1
coord: 745..816
e-value: 4.4E-9
score: 36.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 660..878
e-value: 7.3E-31
score: 109.6
coord: 1037..1238
e-value: 4.7E-27
score: 97.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 322..393
e-value: 4.9E-16
score: 60.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 170..321
e-value: 2.3E-20
score: 75.3
coord: 413..590
e-value: 7.9E-38
score: 132.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 666..812
coord: 991..1179
coord: 311..543
coord: 226..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1687516..1698102 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16595.1mRNA_C-linearis_contig9.16595.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1687254..1698334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16595.1 ID=prot_C-linearis_contig9.16595.1|Name=mRNA_C-linearis_contig9.16595.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1240bp
MTRAVPSLQSSQQHVNMGLSGGAKLSWMVPTQLTQQTSFKYRATSTVGPH
QQHQRQQLLRQRQARPKQRMRKCSVALSFSGGVSTLELRQQPHRRQRSRR
PDPRECSAERFQGPVGREPASMTLASSGKRSPSSTLPVEPSGVSSSGVSS
PGPPRNAAVGVPGPSVPAATAAVARGEVANGLNIFLQCMSRRRLKLAAEA
AAAAAAAAGGVGAKEAAAPKQGGVPACNVFLRALGDARRIDDCVVAYEAM
VACELRPTIVTYSTLISRAGTCRRVRLAERLFGEMLEAGITPDVQAINSL
INAFSKAGSPDQALKAFDQMPRYGVTPSVITFNSLIDACGRAGDVDRARQ
VFSRLAQAGLRANDRTFSALIHSHAVQGQVDEAFSWLQEMRAQGLEPNRV
IYSTLINACGRAGQLARAFQTLDEMVSAGIEPNVITWTTLIDACGKGKEL
EWSFRLFKEMRERGTVPNGVTCSALLDACLKADELDLAFAVLEHMLDVGI
EPTEVTYTSLLTQCARLGQADKAGVVLDELNKKRPTNTNSSNRRGNTTTT
TTTTSDGASTKTNDSASKDSRGAAAAAAAVDPMVRSEAAADRGKDVRDEP
LSGSGEGAAALNGTRATQFSASVKVTTAGQDAPADIAGGGAIGAAASGGN
EAGEAWRMDRKLENDLLKLFGQADQVDAAFKVLEGMVERRDSPDSETWLL
LLNAVDTAGALDKAVELMERSRAEGQGSAVNELTYSALLGACGRAKKLAR
AFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAMETEGVRP
GVRSYTSLLKVISEENTLRTRALQRTRILETRKSSPPSGRASTASASAAT
TAPASTDDTSAAPSAVSQTLSSSSNGSAPDTAEQEKGGEGQALLSPAGEP
AAPETGPPSPAAAGAGAPGFATADSSVIAAWEASGRAKPPRSAAAGGAGA
SSSGRPEAATHHRPSPPPAASASENNPNPNPNPALDNLFRVFLVFQEMRS
RGVRPDLRAYNALVNTCADLGEFERALGVVRLMVDDEEGGGLQPDAVTYT
SLIKAAARASPPRVEEAEEIFATMQQRTNHFSTFARPTEVTHAHLMTASV
MAGDFARALEVWRQQLSAGVAIGSRSTRAALAACGGAGDVDTALEVYDLM
REAGIRPNSRSLLDLVNLCRANGLDSVAARIMRQRSKMAAATSRRKANVS
RRRYTASRNQANQSNSSSRSSSSSSHGNAGSRKNAGQKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf