prot_C-linearis_contig9.16549.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16549.1
Unique Nameprot_C-linearis_contig9.16549.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length114
Homology
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BLAST of mRNA_C-linearis_contig9.16549.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.490e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0 
Query:   39 CLHTICQSCAEERLQRSKDGSSIKCPLCGEVTPDVNTTTYDLQNNILALQDLHRKSRNCDFCDEVVKASHSCNAC 113
            CLHTICQ+CAEE LQRSKDGSSI CPLCG  T DV T+T  LQ+NI+ALQD+HRK+ +CDFCD+V KASH C+ C
Sbjct:   42 CLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDV-TSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHEC 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY5_ECTSI5.490e-2872.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..96
e-value: 7.6E-8
score: 33.8
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 11..64
e-value: 9.6E-6
score: 25.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 39..48
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 8..66
score: 8.845
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 4..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1291063..1291904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16549.1mRNA_C-linearis_contig9.16549.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1291063..1291906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16549.1 ID=prot_C-linearis_contig9.16549.1|Name=mRNA_C-linearis_contig9.16549.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
MPDDDGRCQSCDNTFQLIPRGVESCDLTFSHIPKVLKGCLHTICQSCAEE
RLQRSKDGSSIKCPLCGEVTPDVNTTTYDLQNNILALQDLHRKSRNCDFC
DEVVKASHSCNACE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
IPR001841Znf_RING