mRNA_C-linearis_contig9.16549.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16549.1
Unique NamemRNA_C-linearis_contig9.16549.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16549.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.490e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:  117 CLHTICQSCAEERLQRSKDGSSIKCPLCGEVTPDVNTTTYDLQNNILALQDLHRKSRNCDFCDEVVKASHSCNAC 341
            CLHTICQ+CAEE LQRSKDGSSI CPLCG  T DV T+T  LQ+NI+ALQD+HRK+ +CDFCD+V KASH C+ C
Sbjct:   42 CLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDV-TSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHEC 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY5_ECTSI5.490e-2872.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1291063..1291906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.7e-23
Seed eggNOG ortholog2880.D7FQY5
KEGG koko:K08883
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2177@1,KOG2177@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko04121
Exons2
Model size345
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16549.1prot_C-linearis_contig9.16549.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1291063..1291904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930731.0148318-CDS-C-linearis_contig9:1291062..12913451622930731.0148318-CDS-C-linearis_contig9:1291062..1291345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1291063..1291345 -
1690881219.9863715-CDS-C-linearis_contig9:1291062..12913451690881219.9863715-CDS-C-linearis_contig9:1291062..1291345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1291063..1291345 -
1622930731.0293097-CDS-C-linearis_contig9:1291845..12919041622930731.0293097-CDS-C-linearis_contig9:1291845..1291904Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1291846..1291904 -
1690881220.0014143-CDS-C-linearis_contig9:1291845..12919041690881220.0014143-CDS-C-linearis_contig9:1291845..1291904Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1291846..1291904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930731.0454452-UTR-C-linearis_contig9:1291904..12919061622930731.0454452-UTR-C-linearis_contig9:1291904..1291906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1291905..1291906 -
1690881220.012892-UTR-C-linearis_contig9:1291904..12919061690881220.012892-UTR-C-linearis_contig9:1291904..1291906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1291905..1291906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16549.1

>prot_C-linearis_contig9.16549.1 ID=prot_C-linearis_contig9.16549.1|Name=mRNA_C-linearis_contig9.16549.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=114bp
MPDDDGRCQSCDNTFQLIPRGVESCDLTFSHIPKVLKGCLHTICQSCAEE
RLQRSKDGSSIKCPLCGEVTPDVNTTTYDLQNNILALQDLHRKSRNCDFC
DEVVKASHSCNACE
back to top

mRNA from alignment at C-linearis_contig9:1291063..1291906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16549.1 ID=mRNA_C-linearis_contig9.16549.1|Name=mRNA_C-linearis_contig9.16549.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=844bp|location=Sequence derived from alignment at C-linearis_contig9:1291063..1291906- (Chordaria linearis ClinC8C monoicous)
CGATGCCTGACGACGATGGCCGTTGCCAATCCTGTGATAATACCTTCCAA
CTAATCCCAAGGTGAGCACACGGGTGCGGGGCCGTAAGTCTGTGAAGATT
CGTCGAAAACACGTCGTTACTCTGTACGAAAGACTTCTGTTCTGCATGCA
CGTGGTCTACACGCTACTGATACCAGTTAGGTGTGACACACCAACGAAAA
TAGGGAAGAGCCCCACGATACCCAGCTCTTTTCTACACGCTTATATGAAA
CCCCACTTGTATCTACCTGTATCTGCTGAACGTATGTGTAGCAACATCAG
ACCTCTACTTGTAGCTGGAGTTCGCATTGGATGGGCGGTTTGCAGCTCCG
CAGTATCCCTCGAGTGCACTTGGGAGCTGCTCTCCGTGTACTGACCAATG
TACGTATTTCGGACAACTTTCACAGCTTGAGTACTGCATAACAAGGGATC
CGGGTGATTGTTAACTGGGGAGGGAATGCATGTACATAGCAACTAGAGCG
TCAAAAACAGCGGTCTAAACTGCTGTTACTTTCAACATTTACCTCGCCAT
TGCCGTGACAGGGGAGTGGAGAGTTGTGACCTTACGTTTTCGCATATTCC
GAAGGTGTTGAAGGGATGCTTGCACACGATCTGCCAGAGTTGTGCGGAGG
AGAGACTTCAGCGCTCGAAAGATGGATCCTCGATCAAATGCCCACTTTGC
GGCGAGGTGACTCCAGACGTGAACACCACCACATACGATCTTCAGAACAA
CATATTGGCGCTTCAGGACCTTCATCGAAAAAGCAGGAACTGCGATTTCT
GCGACGAGGTTGTCAAAGCTTCTCATTCCTGCAACGCATGCGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1291063..1291906-

>mRNA_C-linearis_contig9.16549.1 ID=mRNA_C-linearis_contig9.16549.1|Name=mRNA_C-linearis_contig9.16549.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at C-linearis_contig9:1291063..1291906- (Chordaria linearis ClinC8C monoicous)
ATGCCTGACGACGATGGCCGTTGCCAATCCTGTGATAATACCTTCCAACT
AATCCCAAGATGCCTGACGACGATGGCCGTTGCCAATCCTGTGATAATAC
CTTCCAACTAATCCCAAGGGGAGTGGAGAGTTGTGACCTTACGTTTTCGC
ATATTCCGAAGGTGTTGAAGGGATGCTTGCACACGATCTGCCAGAGTTGT
GCGGAGGAGAGACTTCAGCGCTCGAAAGATGGATCCTCGATCAAATGCCC
ACTTTGCGGCGAGGTGACTCCAGACGTGAACACCACCACATACGATCTTC
AGAACAACATATTGGCGCTTCAGGACCTTCATCGAAAAAGCAGGAACTGC
GATTTCTGCGACGAGGTTGTCAAAGCTTCTCATTCCTGCAACGCATGCGA
GGGGAGTGGAGAGTTGTGACCTTACGTTTTCGCATATTCCGAAGGTGTTG
AAGGGATGCTTGCACACGATCTGCCAGAGTTGTGCGGAGGAGAGACTTCA
GCGCTCGAAAGATGGATCCTCGATCAAATGCCCACTTTGCGGCGAGGTGA
CTCCAGACGTGAACACCACCACATACGATCTTCAGAACAACATATTGGCG
CTTCAGGACCTTCATCGAAAAAGCAGGAACTGCGATTTCTGCGACGAGGT
TGTCAAAGCTTCTCATTCCTGCAACGCATGCGAG
back to top