prot_C-linearis_contig9.16516.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16516.1
Unique Nameprot_C-linearis_contig9.16516.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length265
Homology
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BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Match: A0A6H5LIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIE2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.590e-26
Identity = 75/132 (56.82%), Postives = 87/132 (65.91%), Query Frame = 0 
Query:  147 QGSQAASKGAV--GQEARVHVVQMDIVEGEGQAVESDGAVEVVEGGGAEE------------DKGIEEGEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAFVANGGFLVYVFWVM 264
            +G++AA+KG +  G      V  MD++E      ES  AVE   G GAE             DKGIEEGEAGGFVVVA D E  PE    G+++DNDN+S NGISNN+MVIVFCALAFVANGGFLVYVFWVM
Sbjct:  138 EGARAAAKGVLEGGVYRAAQVQTMDVLE-----AESGDAVEAAVGEGAEXXXXXXXXXXXXXDKGIEEGEAGGFVVVAPDSE--PEHRGQGENIDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWVM 262
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BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.380e-25
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 0 
Query:  145 GVQGSQAASKGAV-GQEARVHVVQ-MDIVEGEGQAVESDGAVEVVEGGGAEE----------DKGIEEGEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAFVANGGFLVYVFWV 263
            G +G++AA++G + G  AR   VQ MD++E      ES GAVE   G GAE+          DKGIEEGEAGGFVVVA D E  P++ + G++VDNDN+S NGISNN+MVIVFCALAFVANGGFLVYVFWV
Sbjct:    4 GDEGARAAAEGVLEGGVARAAQVQTMDVLE-----AESGGAVEAAVGEGAEKEXXXXXXXXXDKGIEEGEAGGFVVVAPDSE--PKQRDQGENVDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWV 127
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIE2_9PHAE7.590e-2656.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR44_ECTSI1.380e-2559.54EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..239
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 240..262
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 263..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.869
NoneNo IPR availableTMHMMTMhelixcoord: 241..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1022403..1025073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16516.1mRNA_C-linearis_contig9.16516.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1022157..1025899 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16516.1 ID=prot_C-linearis_contig9.16516.1|Name=mRNA_C-linearis_contig9.16516.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=265bp
MDRLMVLVLAALLCLAHSTPMQQPVVERSSRRPPPPQQRHQHQSEGNSEG
EGQEYYNRGGSTEGTGDEEGARQRRLTGATATNLAANQQHQFAREPQGQQ
QPAKGAKTATTTTAGAGAAESRPAAAAAAAPAGRSDNTISRSVDGVQGSQ
AASKGAVGQEARVHVVQMDIVEGEGQAVESDGAVEVVEGGGAEEDKGIEE
GEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAF
VANGGFLVYVFWVM*
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