mRNA_C-linearis_contig9.16516.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16516.1
Unique NamemRNA_C-linearis_contig9.16516.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Match: A0A6H5LIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIE2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.910e-24
Identity = 75/132 (56.82%), Postives = 87/132 (65.91%), Query Frame = 1 
Query:  685 QGSQAASKGAV--GQEARVHVVQMDIVEGEGQAVESDGAVEVVEGGGAEE------------DKGIEEGEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAFVANGGFLVYVFWVM 1038
            +G++AA+KG +  G      V  MD++E      ES  AVE   G GAE             DKGIEEGEAGGFVVVA D E  PE    G+++DNDN+S NGISNN+MVIVFCALAFVANGGFLVYVFWVM
Sbjct:  138 EGARAAAKGVLEGGVYRAAQVQTMDVLE-----AESGDAVEAAVGEGAEXXXXXXXXXXXXXDKGIEEGEAGGFVVVAPDSE--PEHRGQGENIDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWVM 262
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BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.390e-23
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:  679 GVQGSQAASKGAV-GQEARVHVVQ-MDIVEGEGQAVESDGAVEVVEGGGAEE----------DKGIEEGEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAFVANGGFLVYVFWV 1035
            G +G++AA++G + G  AR   VQ MD++E      ES GAVE   G GAE+          DKGIEEGEAGGFVVVA D E  P++ + G++VDNDN+S NGISNN+MVIVFCALAFVANGGFLVYVFWV
Sbjct:    4 GDEGARAAAEGVLEGGVARAAQVQTMDVLE-----AESGGAVEAAVGEGAEKEXXXXXXXXXDKGIEEGEAGGFVVVAPDSE--PKQRDQGENVDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWV 127
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIE2_9PHAE2.910e-2456.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR44_ECTSI1.390e-2359.54EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1022157..1025899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003550.1
Exons4
Model size1867
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16516.1prot_C-linearis_contig9.16516.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1022403..1025073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930724.1766903-UTR-C-linearis_contig9:1022156..10224021622930724.1766903-UTR-C-linearis_contig9:1022156..1022402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1022157..1022402 +
1690881216.6738465-UTR-C-linearis_contig9:1022156..10224021690881216.6738465-UTR-C-linearis_contig9:1022156..1022402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1022157..1022402 +
1622930724.2653258-UTR-C-linearis_contig9:1025073..10258991622930724.2653258-UTR-C-linearis_contig9:1025073..1025899Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1025074..1025899 +
1690881216.7310078-UTR-C-linearis_contig9:1025073..10258991690881216.7310078-UTR-C-linearis_contig9:1025073..1025899Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1025074..1025899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930724.1973114-CDS-C-linearis_contig9:1022402..10224681622930724.1973114-CDS-C-linearis_contig9:1022402..1022468Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1022403..1022468 +
1690881216.685173-CDS-C-linearis_contig9:1022402..10224681690881216.685173-CDS-C-linearis_contig9:1022402..1022468Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1022403..1022468 +
1622930724.2166576-CDS-C-linearis_contig9:1023326..10234081622930724.2166576-CDS-C-linearis_contig9:1023326..1023408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1023327..1023408 +
1690881216.6983173-CDS-C-linearis_contig9:1023326..10234081690881216.6983173-CDS-C-linearis_contig9:1023326..1023408Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1023327..1023408 +
1622930724.2320464-CDS-C-linearis_contig9:1023825..10243251622930724.2320464-CDS-C-linearis_contig9:1023825..1024325Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1023826..1024325 +
1690881216.7091668-CDS-C-linearis_contig9:1023825..10243251690881216.7091668-CDS-C-linearis_contig9:1023825..1024325Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1023826..1024325 +
1622930724.251185-CDS-C-linearis_contig9:1024926..10250731622930724.251185-CDS-C-linearis_contig9:1024926..1025073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1024927..1025073 +
1690881216.718155-CDS-C-linearis_contig9:1024926..10250731690881216.718155-CDS-C-linearis_contig9:1024926..1025073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1024927..1025073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16516.1

>prot_C-linearis_contig9.16516.1 ID=prot_C-linearis_contig9.16516.1|Name=mRNA_C-linearis_contig9.16516.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=265bp
MDRLMVLVLAALLCLAHSTPMQQPVVERSSRRPPPPQQRHQHQSEGNSEG
EGQEYYNRGGSTEGTGDEEGARQRRLTGATATNLAANQQHQFAREPQGQQ
QPAKGAKTATTTTAGAGAAESRPAAAAAAAPAGRSDNTISRSVDGVQGSQ
AASKGAVGQEARVHVVQMDIVEGEGQAVESDGAVEVVEGGGAEEDKGIEE
GEAGGFVVVARDGEMRPEEGETGDSVDNDNSSKNGISNNIMVIVFCALAF
VANGGFLVYVFWVM*
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mRNA from alignment at C-linearis_contig9:1022157..1025899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16516.1 ID=mRNA_C-linearis_contig9.16516.1|Name=mRNA_C-linearis_contig9.16516.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3743bp|location=Sequence derived from alignment at C-linearis_contig9:1022157..1025899+ (Chordaria linearis ClinC8C monoicous)
CTCGGGTGCTCGGGGGTGGTCGCGACGTGAAACACTGCCACCCACAGGGC
TCTCTCCTATTACAGGACATCGGAGGCTTGCCCCCCAAACAAGCCGCTGA
CAAAATTTCGATTTCATCTGTTGGCAAAATCGAAAACCGGGGTCAAAAGG
TGGGGAACGGCAAGCGGAAAGATAGAGACAGCAGCAGCAGTGCAGCGGGA
CGAGAGCGACCACCCAGAGCGTTAAAGCCTCGTCGTTACAACAGCCATGG
ACCGTTTGATGGTGCTGGTGCTGGCAGCGTTACTCTGCTTGGCTCACAGC
ACTCCTATGCAGGTACAGGATGGTGTCTTCTCTGCGTGAGCTCTTCATTT
TGCACAAAGTTGCCTCCTCTCGACAGCAGTCCATCTGCACGTTACCTGTA
GATGGGATGAGCGCAGGCTCTCAGGTGTGTCTATCCGTGCGTTGGCGATA
TGCAGATATGCACTCTGCCATTTGATGGTGTAGACAGATGGTTCATTTCT
GCTGCCTCTCTCATATCACAGACCCCTAACGGCGCATTGAAGGCGTCGAG
AGGCTCGCGGGACGGAGGAGATCGTTGTTGTGCACACATCACACATCGTG
TGTAGGAAATGCGCGGGGGATCGCAGCAGTGCACTTCCGCCCAATATGCA
ACTGCTGTCTGTAGCTTATCTCCGACGCCCACAATCTTATCGGGCCGGGA
AATAGTCATGGCTCGACGAACGTGATTTGTACGAGAGCTTTGTTAAACTG
CTTATGCAATTTCATGGCTTTGCTCACACACGACCGTGGTGAAGGCACGT
AGAGCATGCACATTATCTGCCCTCCTGCTTTACTCCAGCACCACATCGGA
CAGGCGTTCCCAGAGCGAACAACAATAACCAACCCATTTTTCCTCCCGAA
TTTCGCACTGTGGTTGAAGAGAATTCGTGAGTCGAAACTATACACACAGA
GAAATTACCAGGTGTTTCGGCGACGCAACATACACCGAATACCGGAGGCA
ATAACGTTACTTGCGGTAGCCAGCGACAAACATCGGATCAACGGCAGCAG
CCTCGGCGGCGTCACCACCCGTTCTCTGTCCTGGTGAAGAATATGTGTTG
GATAGCTTCGAGTACATGTCTTCGGCGCTGTTACTTTACCTCTCTTTCCG
TTGCCCTCCATCGATTGCAGCAGCCAGTAGTTGAACGGAGCTCGCGACGA
CCACCACCACCACAGCAGCGACACCAGCATCAGAGCGAAGGCAACTCGGA
AGGTGAATAAGGCGATGTATTGTGAATGCAGGAAATGTGCTTCTTGGCTT
TCGGACAGTAGATTTCAGCACCAAGATTGTCTCTGTTGGGTTAAGGGGGT
GTATGGGGAGCAGAGCGTAGCAGCGGGAATGCTGCTTTGCGCACACGAAG
TCAAGTGGCAAGTGCGATCTGAGTATTAGCATCCGGGTTTTTCGTTGTTT
AGTCGTCGTCCAGGGTTACTCGAAAACCAGCAGATGAAAGGGGGTATAGA
AAGGTAATGCCCATGTTTGGGTACGAAGCATTTACCGGCAGATACACGAT
CAGAAGTTCTCTAGATCGCAGGTTCTCTCTGTGTTAACTTTCGTGTTTTT
TTTCAATGTATGGGGTATCCTAACTTGTGTCGCCCACTGTATTTGTTGAA
CAATCGCTCAAACGGGAAGGCGAAGGCCAGGAGTACTACAACCGCGGTGG
CAGCACGGAAGGCACCGGAGATGAAGAGGGGGCACGGCAACGGCGATTAA
CGGGGGCAACAGCCACGAACTTAGCAGCCAACCAGCAACACCAATTTGCT
CGAGAACCGCAGGGACAACAACAACCGGCGAAGGGAGCGAAAACAGCAAC
AACAACAACAGCGGGAGCGGGAGCAGCGGAGAGTAGACCAGCAGCAGCAG
CAGCAGCAGCGCCGGCCGGTAGAAGCGACAACACTATTTCGCGATCGGTC
GACGGAGTACAAGGGTCGCAGGCGGCTTCGAAGGGGGCTGTTGGGCAAGA
GGCGCGGGTCCACGTTGTTCAGATGGACATCGTCGAGGGCGAAGGCCAAG
CGGTCGAGAGCGATGGTGCGGTCGAGGTGGTGGAAGGAGGAGGGGCGGAG
GAGGATAAGGGGATCGAGGAGGGCGAAGCAGGAGGGTTTGTGGTGGTGGC
GCGGGATGGCGAGATGAGGGTGGGTATTTCACTTCGAGTTATTATTGTCT
CCTATTGTTGCTAGTGAGCAGCTCGAGGCTCACCCGGGCCTTGGCATGTG
GGACGACCGTTTGCGTGCTCGGTGTCATATAGGGCTTGGAACTCCCTTGT
TTGAAGGAACCTCGTGCCTGTATCGCCGATATGTCTGTGGAGATGTCGGC
AGAGGTGCAGATACTCCCTGAAAGAGATCAATTTCCTTCTCCCTTATCCC
AGGCCCTTTGTAGCACACCGCACCCGCCGGAAACCCCCCCCGTTTTCCTT
CGCATGGCTCGAGTGTTTTGTAGGTTGAATTCTGATTTCGATTTTATTTC
AACTGATCAAGATTTTATTATCAGAATAAATCCATGGCCCTGGAGGCAAT
AAGTTTTGCGTACAAGTACGTGCATGGATCAATCTTGCGTGCTCTCTAAA
CTCCCAAAACCAGCCTGTCAGCAAGCAGAGCTATCCAATCGCGTGGTCAC
AATTTCTTCCCCCCCAACCTCCCTAACGGGCCGCTGTGAGTGACAGTAGT
ACTGACAGTCGTTTTCACGTTCTCCTCCTGCCCCCACGCGCCGTTGGTTC
TGAATTACACCAATTGAAAGCCGGAGGAGGGAGAAACTGGGGACAGCGTT
GACAACGATAACTCCTCGAAAAACGGGATCAGCAACAACATAATGGTCAT
CGTCTTCTGCGCCCTGGCGTTCGTGGCCAACGGCGGCTTTCTGGTTTACG
TGTTTTGGGTCATGTAGATCTGTCCATGGGTGTGGTCGCCCAAAAGAGGC
CCGCTTTAAATCAAAGGCGCTGAAGATGCGTTCGCTCTCTTCCCATGTTT
GTGGGCGCGTTCCACGATGATATTGTTTTGGTGTGGATGCTGCGTGTGAT
GTTGGTGTAAGATCGACATCATGGGAGTCAGTAGATTTTATGTTCGCAGT
GATGATGGATGGATACCTCATTTGATGTGCGCCTGTTTGTTCGTTGTTTT
TCCTCTTGGTTTTATCTCGCGGGTTTTGGTGGTTGATATTTGTTCTCAGG
CTGACTATCCGGCAGTTCGTGATGCATGTAAATCGTAGTTTTCTTAAGTG
GCAGCTCCAAAGAGTTCGAACCAAATGCAAAGGTTCAAACCATTTCGACA
TTTCTCACAACACCGAGAGAAACAGGGACCCCTTGGAGAGAGCACCGAAC
TTGCTGAAGTCTTACGTTGAGCCGGCGGTGTAGTGGTTTGCTTTTGCCGC
GCCAAGTGTGTACATATATTGCGTGCGCTTTCGTGTTGATTTTGGGTAGG
CTAACCGCCGTTTCTTCTGCTGCTTTAATTGATTACTGTGAAACCGCAGT
TGGTTCGCAATTGCAACTCTTCATGGCATGTTTTAATGCCACGACCCGAG
CCCCCATTTTGTTTTGTTTTGTCCTGTGTGCCTTTTGACTGTGTTGGTCG
TTGTACCTATGTTCTGATGCTTGCCAGAGGGGAAGGGGTATCGTGTACAA
ACTCTGAGCAAAGTTCCTTGATTTCTTTTGGTTGGCGGGGGGGGGCAAGG
GCGTTGAATGGGCTTGCGCAGCGAACTGCGGGATATCCCTTTT
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Coding sequence (CDS) from alignment at C-linearis_contig9:1022157..1025899+

>mRNA_C-linearis_contig9.16516.1 ID=mRNA_C-linearis_contig9.16516.1|Name=mRNA_C-linearis_contig9.16516.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at C-linearis_contig9:1022157..1025899+ (Chordaria linearis ClinC8C monoicous)
ATGGACCGTTTGATGGTGCTGGTGCTGGCAGCGTTACTCTGCTTGGCTCA
CAGCACTCCTATGCAGATGGACCGTTTGATGGTGCTGGTGCTGGCAGCGT
TACTCTGCTTGGCTCACAGCACTCCTATGCAGCAGCCAGTAGTTGAACGG
AGCTCGCGACGACCACCACCACCACAGCAGCGACACCAGCATCAGAGCGA
AGGCAACTCGGAAGCAGCCAGTAGTTGAACGGAGCTCGCGACGACCACCA
CCACCACAGCAGCGACACCAGCATCAGAGCGAAGGCAACTCGGAAGGCGA
AGGCCAGGAGTACTACAACCGCGGTGGCAGCACGGAAGGCACCGGAGATG
AAGAGGGGGCACGGCAACGGCGATTAACGGGGGCAACAGCCACGAACTTA
GCAGCCAACCAGCAACACCAATTTGCTCGAGAACCGCAGGGACAACAACA
ACCGGCGAAGGGAGCGAAAACAGCAACAACAACAACAGCGGGAGCGGGAG
CAGCGGAGAGTAGACCAGCAGCAGCAGCAGCAGCAGCGCCGGCCGGTAGA
AGCGACAACACTATTTCGCGATCGGTCGACGGAGTACAAGGGTCGCAGGC
GGCTTCGAAGGGGGCTGTTGGGCAAGAGGCGCGGGTCCACGTTGTTCAGA
TGGACATCGTCGAGGGCGAAGGCCAAGCGGTCGAGAGCGATGGTGCGGTC
GAGGTGGTGGAAGGAGGAGGGGCGGAGGAGGATAAGGGGATCGAGGAGGG
CGAAGCAGGAGGGTTTGTGGTGGTGGCGCGGGATGGCGAGATGAGGGCGA
AGGCCAGGAGTACTACAACCGCGGTGGCAGCACGGAAGGCACCGGAGATG
AAGAGGGGGCACGGCAACGGCGATTAACGGGGGCAACAGCCACGAACTTA
GCAGCCAACCAGCAACACCAATTTGCTCGAGAACCGCAGGGACAACAACA
ACCGGCGAAGGGAGCGAAAACAGCAACAACAACAACAGCGGGAGCGGGAG
CAGCGGAGAGTAGACCAGCAGCAGCAGCAGCAGCAGCGCCGGCCGGTAGA
AGCGACAACACTATTTCGCGATCGGTCGACGGAGTACAAGGGTCGCAGGC
GGCTTCGAAGGGGGCTGTTGGGCAAGAGGCGCGGGTCCACGTTGTTCAGA
TGGACATCGTCGAGGGCGAAGGCCAAGCGGTCGAGAGCGATGGTGCGGTC
GAGGTGGTGGAAGGAGGAGGGGCGGAGGAGGATAAGGGGATCGAGGAGGG
CGAAGCAGGAGGGTTTGTGGTGGTGGCGCGGGATGGCGAGATGAGGCCGG
AGGAGGGAGAAACTGGGGACAGCGTTGACAACGATAACTCCTCGAAAAAC
GGGATCAGCAACAACATAATGGTCATCGTCTTCTGCGCCCTGGCGTTCGT
GGCCAACGGCGGCTTTCTGGTTTACGTGTTTTGGGTCATGTAGCCGGAGG
AGGGAGAAACTGGGGACAGCGTTGACAACGATAACTCCTCGAAAAACGGG
ATCAGCAACAACATAATGGTCATCGTCTTCTGCGCCCTGGCGTTCGTGGC
CAACGGCGGCTTTCTGGTTTACGTGTTTTGGGTCATGTAG
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