prot_C-linearis_contig9.16462.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16462.1
Unique Nameprot_C-linearis_contig9.16462.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length601
Homology
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: D7G2W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI)

HSP 1 Score: 480 bits (1236), Expect = 1.380e-160
Identity = 361/595 (60.67%), Postives = 395/595 (66.39%), Query Frame = 0
Query:    2 ADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDGTAAADQASVDGLLDPATPSAEDSGKSASRLAAERRRQRILSKSTERMAKVQGDRVIRGGEADGAGYEGGGESLDDMLEAAEEEFFGHQGQDGAGAGATGVAEAKPAAPQQAYFKSAKGSXXXXXXXXGLSRGGGRGGSDVAGAAQSKVGRRGAAGDGFKPVRSEGESQASASASPGXXXXXXXXXXXXXXX---RRPTGNKALEEKRFDLAAIQSLSRAAGAGKNSWTAGSGVGAGTADPASKRLLGGLRFWTGLEGVAKTALLLLAGAGVGGLLLPDARAAVAQAKFEAEHTRGSVSSRSRLEMFLAGGDRSGGSKNPTALDVDFDASGMS--EFGDVVDSVEVSPSDXXXXXXXXXXXXXXXXXXXXAKDGAGQGEYD---WARVLEEMAGADRADGGLVSEMTDSFLSYMDYVVGWAHYLSTVSMPWGSAA-EISCVSAIYLALLVRLVVATVFSGVRAVLGLPAFPPTASASKPGMVMGMVLASVPTLGKVLALFNMVKSIFSETNLVVAGTVLTLTFSLAAEEGAGPRRLAETISSALGLM 587
            A A EQQRE+RRQKV+ARSQGGHRAPVVDLAT+QKEI+P+G TA LDD   A        L D   P+ ED GKSASRLAAERRRQRILS+STERMAKVQGDRVIR G+A       G ESLDDMLEAAE EFFG     G   G TGVAE KPAA +          XXXXXXXX                   K   R   GD      +EG     A+ S G XXXXXXXXXXXXXX   RRPTGNKALE++ FDLAAIQSLSRAAG      T  SGVG G A P  KRLLGG+RFWTGLEGV KTALLLL GAGVGGLLLP+ARAAVAQAKFEAEH +G   SRSRLE+FLAG    GGS+   ALD  FDA   +  EFGDV D+   S                         DG  +G  D    A  + E  G D    G++SE TD FL+++D VVGWAHYLS VSMPWG    EISCVSAIYLA+ VRLVVA  FSGVR +LGLPAFP     SKPGMVMGMVLA+VPTLGKVLA  N+VKSIFS+TNLVVAGTVLTL  +LA EEGAGPRRLA +IS ALGL 
Sbjct:    3 ATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAV-------LDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDA-----AQGEESLDDMLEAAEVEFFG-----GKEKGTTGVAEVKPAAARXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXKPSSRQRLGD------AEGAGLKHAARSDGGXXXXXXXXXXXXXXXSSRRPTGNKALEKQGFDLAAIQSLSRAAG------TDNSGVG-GAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAG---DGGSEGRNALDEGFDAGSTAADEFGDVGDAYSSSSGSFESAENTEDSEEDAKV------DGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDMVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVMLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLF 551          
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: A0A6H5JKL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 3.860e-99
Identity = 218/328 (66.46%), Postives = 237/328 (72.26%), Query Frame = 0
Query:  263 LSRAAGAGKNSWTAGSGVGAGTADPASKRLLGGLRFWTGLEGVAKTALLLLAGAGVGGLLLPDARAAVAQAKFEAEHTRGSVSSRSRLEMFLAGGDRSGGSKNPTALDVDFDASGMS--EFGDVVDSVEVSPSDXXXXXXXXXXXXXXXXXXXXAKDGAGQGEYDWARVLEEMAGADRADGGLVSEMTDSFLSYMDYVVGWAHYLSTVSMPW-GSAAEISCVSAIYLALLVRLVVATVFSGVRAVLGLPAFPPTASASKPGMVMGMVLASVPTLGKVLALFNMVKSIFSETNLVVAGTVLTLTFSLAAEEGAGPRRLAETISSALGLM 587
            +SRAAG G       SGVG G A P  KRLLGG+RFWTGLEGV KTALLLL GAGVGGLLLP+ARAAVAQAKFEA+H +G   SRSRLE FLAG   S G K   ALDV FDA   +  EFGDVVD        XXXXXXXXXXXXXX        D   +   D A +   M   +  D GL+SE TD FL+++D VVGWAHYLS VSMPW G   EISCVSAI+LAL VRLVVA  FSGVR VLGLPAFP   S SKPGMVMGMVLA+VPTLGKVLA  N+VKSIFS+TNLVVAGTVLTL  +LA EEGAGPRRLA +IS ALGL 
Sbjct:    1 MSRAAGTGN------SGVG-GAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEADHMQGFADSRSRLEFFLAGDGVSEGRK---ALDVGFDAGSTAADEFGDVVDXXXXXXXXXXXXXXXXXXXXXXEEDAKV--DDVAERRGDEAVLAATMGEEEAGDDGLLSEATDWFLNFVDLVVGWAHYLSAVSMPWRGGVGEISCVSAIHLALFVRLVVAVAFSGVRVVLGLPAFPAAQSTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLF 316          
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: A0A6H5JKC7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.190e-46
Identity = 114/168 (67.86%), Postives = 126/168 (75.00%), Query Frame = 0
Query:    2 ADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDGTAAADQASVDGLLDPATPSAEDSGKSASRLAAERRRQRILSKSTERMAKVQGDRVIRGGEADGAGYEGGGESLDDMLEAAEEEFFGHQGQDGAGAGATGVAEAKPAAP-QQAYFKSAKG 168
            A A EQQRE+RRQKV+ARSQGGHRAPVVDLAT+QKEI+P+G TA LDD   A     VD   D   P+ ED+GKSASRLAAERRRQRILS+STERMAKVQGDRVIR G+A       G ESLDDML+AAE EFFG + +     G TGVAE KPAA  QQAYFKS  G
Sbjct:    3 ATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDEVGAV----VD---DHPLPAPEDAGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDA-----AEGEESLDDMLQAAEVEFFGEKEE-----GTTGVAEVKPAATRQQAYFKSGGG 153          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2W5_ECTSI1.380e-16060.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL1_9PHAE3.860e-9966.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKC7_9PHAE5.190e-4667.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 484..510
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 511..521
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 546..567
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..483
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 541..545
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 522..540
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 568..600
NoneNo IPR availableTMHMMTMhelixcoord: 521..543
NoneNo IPR availableTMHMMTMhelixcoord: 484..506

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:206951..213628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16462.1mRNA_C-linearis_contig9.16462.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 206611..214613 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16462.1 ID=prot_C-linearis_contig9.16462.1|Name=mRNA_C-linearis_contig9.16462.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=601bp
MADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDG
TAAADQASVDGLLDPATPSAEDSGKSASRLAAERRRQRILSKSTERMAKV
QGDRVIRGGEADGAGYEGGGESLDDMLEAAEEEFFGHQGQDGAGAGATGV
AEAKPAAPQQAYFKSAKGSGGGGGGDGGLSRGGGRGGSDVAGAAQSKVGR
RGAAGDGFKPVRSEGESQASASASPGGSSSAKRPSSAAASRRRPTGNKAL
EEKRFDLAAIQSLSRAAGAGKNSWTAGSGVGAGTADPASKRLLGGLRFWT
GLEGVAKTALLLLAGAGVGGLLLPDARAAVAQAKFEAEHTRGSVSSRSRL
EMFLAGGDRSGGSKNPTALDVDFDASGMSEFGDVVDSVEVSPSDSDSKAA
GAVGAEAEGGGAAVAKDGAGQGEYDWARVLEEMAGADRADGGLVSEMTDS
FLSYMDYVVGWAHYLSTVSMPWGSAAEISCVSAIYLALLVRLVVATVFSG
VRAVLGLPAFPPTASASKPGMVMGMVLASVPTLGKVLALFNMVKSIFSET
NLVVAGTVLTLTFSLAAEEGAGPRRLAETISSALGLMGCGTPQDGSLKEL
*
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