mRNA_C-linearis_contig9.16462.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: D7G2W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W5_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 2.400e-155 Identity = 361/595 (60.67%), Postives = 395/595 (66.39%), Query Frame = 2
Query: 344 ADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDGTAAADQASVDGLLDPATPSAEDSGKSASRLAAERRRQRILSKSTERMAKVQGDRVIRGGEADGAGYEGGGESLDDMLEAAEEEFFGHQGQDGAGAGATGVAEAKPAAPQQAYFKSAKGSXXXXXXXXGLSRGGGRGGSDVAGAAQSKVGRRGAAGDGFKPVRSEGESQASASASPGXXXXXXXXXXXXXXX---RRPTGNKALEEKRFDLAAIQSLSRAAGAGKNSWTAGSGVGAGTADPASKRLLGGLRFWTGLEGVAKTALLLLAGAGVGGLLLPDARAAVAQAKFEAEHTRGSVSSRSRLEMFLAGGDRSGGSKNPTALDVDFDASGMS--EFGDVVDSVEVSPSDXXXXXXXXXXXXXXXXXXXXAKDGAGQGEYD---WARVLEEMAGADRADGGLVSEMTDSFLSYMDYVVGWAHYLSTVSMPWGSAA-EISCVSAIYLALLVRLVVATVFSGVRAVLGLPAFPPTASASKPGMVMGMVLASVPTLGKVLALFNMVKSIFSETNLVVAGTVLTLTFSLAAEEGAGPRRLAETISSALGLM 2101
A A EQQRE+RRQKV+ARSQGGHRAPVVDLAT+QKEI+P+G TA LDD A L D P+ ED GKSASRLAAERRRQRILS+STERMAKVQGDRVIR G+A G ESLDDMLEAAE EFFG G G TGVAE KPAA + XXXXXXXX K R GD +EG A+ S G XXXXXXXXXXXXXX RRPTGNKALE++ FDLAAIQSLSRAAG T SGVG G A P KRLLGG+RFWTGLEGV KTALLLL GAGVGGLLLP+ARAAVAQAKFEAEH +G SRSRLE+FLAG GGS+ ALD FDA + EFGDV D+ S DG +G D A + E G D G++SE TD FL+++D VVGWAHYLS VSMPWG EISCVSAIYLA+ VRLVVA FSGVR +LGLPAFP SKPGMVMGMVLA+VPTLGKVLA N+VKSIFS+TNLVVAGTVLTL +LA EEGAGPRRLA +IS ALGL
Sbjct: 3 ATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDDVGAV-------LDDHPLPAPEDEGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDA-----AQGEESLDDMLEAAEVEFFG-----GKEKGTTGVAEVKPAAARXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXKPSSRQRLGD------AEGAGLKHAARSDGGXXXXXXXXXXXXXXXSSRRPTGNKALEKQGFDLAAIQSLSRAAG------TDNSGVG-GAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEAEHMQGFADSRSRLELFLAG---DGGSEGRNALDEGFDAGSTAADEFGDVGDAYSSSSGSFESAENTEDSEEDAKV------DGVAEGRGDEAVLAATMGEEEGGDVGHDGMLSEATDWFLNFVDMVVGWAHYLSAVSMPWGGGVGEISCVSAIYLAIFVRLVVAVAFSGVRVMLGLPAFPAANPTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLF 551
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: A0A6H5JKL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL1_9PHAE) HSP 1 Score: 314 bits (804), Expect = 4.270e-95 Identity = 218/328 (66.46%), Postives = 237/328 (72.26%), Query Frame = 2
Query: 1127 LSRAAGAGKNSWTAGSGVGAGTADPASKRLLGGLRFWTGLEGVAKTALLLLAGAGVGGLLLPDARAAVAQAKFEAEHTRGSVSSRSRLEMFLAGGDRSGGSKNPTALDVDFDASGMS--EFGDVVDSVEVSPSDXXXXXXXXXXXXXXXXXXXXAKDGAGQGEYDWARVLEEMAGADRADGGLVSEMTDSFLSYMDYVVGWAHYLSTVSMPW-GSAAEISCVSAIYLALLVRLVVATVFSGVRAVLGLPAFPPTASASKPGMVMGMVLASVPTLGKVLALFNMVKSIFSETNLVVAGTVLTLTFSLAAEEGAGPRRLAETISSALGLM 2101
+SRAAG G SGVG G A P KRLLGG+RFWTGLEGV KTALLLL GAGVGGLLLP+ARAAVAQAKFEA+H +G SRSRLE FLAG S G K ALDV FDA + EFGDVVD XXXXXXXXXXXXXX D + D A + M + D GL+SE TD FL+++D VVGWAHYLS VSMPW G EISCVSAI+LAL VRLVVA FSGVR VLGLPAFP S SKPGMVMGMVLA+VPTLGKVLA N+VKSIFS+TNLVVAGTVLTL +LA EEGAGPRRLA +IS ALGL
Sbjct: 1 MSRAAGTGN------SGVG-GAATPGRKRLLGGVRFWTGLEGVTKTALLLLLGAGVGGLLLPEARAAVAQAKFEADHMQGFADSRSRLEFFLAGDGVSEGRK---ALDVGFDAGSTAADEFGDVVDXXXXXXXXXXXXXXXXXXXXXXEEDAKV--DDVAERRGDEAVLAATMGEEEAGDDGLLSEATDWFLNFVDLVVGWAHYLSAVSMPWRGGVGEISCVSAIHLALFVRLVVAVAFSGVRVVLGLPAFPAAQSTSKPGMVMGMVLATVPTLGKVLAWGNVVKSIFSDTNLVVAGTVLTLALNLAFEEGAGPRRLAGSISGALGLF 316
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Match: A0A6H5JKC7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC7_9PHAE) HSP 1 Score: 169 bits (429), Expect = 5.590e-45 Identity = 114/168 (67.86%), Postives = 126/168 (75.00%), Query Frame = 2
Query: 344 ADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDGTAAADQASVDGLLDPATPSAEDSGKSASRLAAERRRQRILSKSTERMAKVQGDRVIRGGEADGAGYEGGGESLDDMLEAAEEEFFGHQGQDGAGAGATGVAEAKPAAP-QQAYFKSAKG 844
A A EQQRE+RRQKV+ARSQGGHRAPVVDLAT+QKEI+P+G TA LDD A VD D P+ ED+GKSASRLAAERRRQRILS+STERMAKVQGDRVIR G+A G ESLDDML+AAE EFFG + + G TGVAE KPAA QQAYFKS G
Sbjct: 3 ATAVEQQREARRQKVLARSQGGHRAPVVDLATEQKEIAPRGVTADLDDEVGAV----VD---DHPLPAPEDAGKSASRLAAERRRQRILSRSTERMAKVQGDRVIRSGDA-----AEGEESLDDMLQAAEVEFFGEKEE-----GTTGVAEVKPAATRQQAYFKSGGG 153 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16462.1 >prot_C-linearis_contig9.16462.1 ID=prot_C-linearis_contig9.16462.1|Name=mRNA_C-linearis_contig9.16462.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=601bp MADAREQQRESRRQKVMARSQGGHRAPVVDLATQQKEISPQGATAVLDDGback to top mRNA from alignment at C-linearis_contig9:206611..214613+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16462.1 ID=mRNA_C-linearis_contig9.16462.1|Name=mRNA_C-linearis_contig9.16462.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8003bp|location=Sequence derived from alignment at C-linearis_contig9:206611..214613+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:206611..214613+ >mRNA_C-linearis_contig9.16462.1 ID=mRNA_C-linearis_contig9.16462.1|Name=mRNA_C-linearis_contig9.16462.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3606bp|location=Sequence derived from alignment at C-linearis_contig9:206611..214613+ (Chordaria linearis ClinC8C monoicous)back to top |