prot_C-linearis_contig89.16447.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16447.1
Unique Nameprot_C-linearis_contig89.16447.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length335
Homology
BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.660e-46
Identity = 193/334 (57.78%), Postives = 232/334 (69.46%), Query Frame = 0
Query:    1 DRTLGWPEALPSNEYEQIIGATFAGEGESGSRAPSRSALSTALFAACLASQSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAGADAAAQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDILNAKPMFTRGRLPKVLRATLEYIERAE-----PNSPTWTAHDGEHDGYGSEATAASA-APRHNLTDYKHKHXXXYRRDS-LEQPSSGRGGQQLATTGGIAWPDDQP-----RHVQGSTRTSITEGGEREQDWEPRGWELEGGRDVVDGRSE 322
            DRTL WPEALP+ EY++++GA  AG G++ S  PS SALSTALFAA LAS+ +DAAA + LL+++G GI DV D++GRTPLHH CR DD G+ RLL +AGAD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RED+LN++P F RGRLPKVLRATL YI+ AE     P SPTWTA DG    YGSE T A+  + R +      +H      +S  E PS G G  Q   T   +  + +       H +G    + T+  ER +DW+ R  EL+G  +V++GR+E
Sbjct:  373 DRTLRWPEALPAREYDEVMGAVLAGGGDNSS-VPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPTFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDG----YGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDRLERNRDWDLR--ELQGSGNVLEGRNE 699          
BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Match: A0A6H5L1T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.240e-25
Identity = 151/392 (38.52%), Postives = 183/392 (46.68%), Query Frame = 0
Query:   19 IGATFAGEGESGSRAPSRSALSTALFAACLASQSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAGADAAAQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------REDILNAKPMFTRGRLPKVLRATLEYIERAEPN--------------SPTWTAHDGEHDGYGSEATAASAAPRHNLTDYKH-KHXXXYRRDSLEQP-SSGRGGQQLATTGGIAWPDDQP-----RHVQGSTRTSITEGGEREQDWEPRGWELEGGRDVVDGRSEGRS 325
            +GA  A EG   SR PS SALSTALFAA LAS+ +DAAA + LL++ G GI DVRD++GRTPLHH CR DD G+ RLL +AGAD  A DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                       RED+LN++ MF RGRLPKVLRATL Y++ AE +              SPTWTA DG    YGSE T A+A      +   H +H      DS  QP S G    Q   T   +  + +       H +G    + T+  ER +DW+ R  EL+G  +V++ R+E  S
Sbjct:    1 MGAVLA-EGGDNSRVPSCSALSTALFAATLASRYNDAAAVIRLLEVCGRGIADVRDDNGRTPLHHACRGDDAGLVRLLRRAGADPDAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEDTPLHLAVGFSSVPNDRVGTCTHPNTFHPGNAINHVASEPSLGVRCLEYVHQGRRRSASFPTNTLDLGPIQVRHGNLSCVKALVEGGAKLSRRNTLGFTPREDLLNSETMFARGRLPKVLRATLAYVQDAEASAPQPQWQASAPQSQSPTWTAQDG----YGSEDTPATAVSSRRSSIGGHFRHAFDANFDSDAQPPSEGERPLQQINTASASGKETEALHYYRHHAKGKAHATATDRLERNRDWDLR--ELQGSGNVLERRNEDES 385          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV96_ECTSI1.660e-4657.78Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L1T4_9PHAE9.240e-2538.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 142..171
e-value: 9.5E-7
score: 38.4
coord: 76..105
e-value: 0.0038
score: 26.5
coord: 109..138
e-value: 2.6E-4
score: 30.3
IPR002110Ankyrin repeatPFAMPF13606Ank_3coord: 77..103
e-value: 7.5E-4
score: 19.8
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 109..141
score: 12.048
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 76..108
score: 11.674
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 142..174
score: 13.678
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 39..146
e-value: 7.7E-27
score: 95.5
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 47..180
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 109..167
e-value: 8.9E-13
score: 48.6
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 71..179
score: 35.862
NoneNo IPR availableGENE3D1.25.40.960coord: 147..184
e-value: 6.9E-9
score: 37.5
NoneNo IPR availablePANTHERPTHR24134FAMILY NOT NAMEDcoord: 73..179
coord: 57..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:714228..716734 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16447.1mRNA_C-linearis_contig89.16447.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 714228..716734 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16447.1 ID=prot_C-linearis_contig89.16447.1|Name=mRNA_C-linearis_contig89.16447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
DRTLGWPEALPSNEYEQIIGATFAGEGESGSRAPSRSALSTALFAACLAS
QSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAG
ADAAAQDSRGNSPLMVAAATGSLACLQLLVQQGSDLDCSNDDGDTPLHVA
VRHGNLSCVKILVEGGAWLSQRNTQGFTPREDILNAKPMFTRGRLPKVLR
ATLEYIERAEPNSPTWTAHDGEHDGYGSEATAASAAPRHNLTDYKHKHHH
HYRRDSLEQPSSGRGGQQLATTGGIAWPDDQPRHVQGSTRTSITEGGERE
QDWEPRGWELEGGRDVVDGRSEGRSEGGLSSGGGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom