mRNA_C-linearis_contig89.16447.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16447.1
Unique NamemRNA_C-linearis_contig89.16447.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.660e-46
Identity = 193/334 (57.78%), Postives = 232/334 (69.46%), Query Frame = 1 
Query:    1 DRTLGWPEALPSNEYEQIIGATFAGEGESGSRAPSRSALSTALFAACLASQSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAGADAAAQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDILNAKPMFTRGRLPKVLRATLEYIERAE-----PNSPTWTAHDGEHDGYGSEATAASA-APRHNLTDYKHKHXXXYRRDS-LEQPSSGRGGQQLATTGGIAWPDDQP-----RHVQGSTRTSITEGGEREQDWEPRGWELEGGRDVVDGRSE 966
            DRTL WPEALP+ EY++++GA  AG G++ S  PS SALSTALFAA LAS+ +DAAA + LL+++G GI DV D++GRTPLHH CR DD G+ RLL +AGAD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      RED+LN++P F RGRLPKVLRATL YI+ AE     P SPTWTA DG    YGSE T A+  + R +      +H      +S  E PS G G  Q   T   +  + +       H +G    + T+  ER +DW+ R  EL+G  +V++GR+E
Sbjct:  373 DRTLRWPEALPAREYDEVMGAVLAGGGDNSS-VPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPTFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDG----YGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDRLERNRDWDLR--ELQGSGNVLEGRNE 699
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BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Match: A0A6H5L1T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.240e-25
Identity = 151/392 (38.52%), Postives = 183/392 (46.68%), Query Frame = 1 
Query:   55 IGATFAGEGESGSRAPSRSALSTALFAACLASQSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAGADAAAQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------REDILNAKPMFTRGRLPKVLRATLEYIERAEPN--------------SPTWTAHDGEHDGYGSEATAASAAPRHNLTDYKH-KHXXXYRRDSLEQP-SSGRGGQQLATTGGIAWPDDQP-----RHVQGSTRTSITEGGEREQDWEPRGWELEGGRDVVDGRSEGRS 975
            +GA  A EG   SR PS SALSTALFAA LAS+ +DAAA + LL++ G GI DVRD++GRTPLHH CR DD G+ RLL +AGAD  A DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                       RED+LN++ MF RGRLPKVLRATL Y++ AE +              SPTWTA DG    YGSE T A+A      +   H +H      DS  QP S G    Q   T   +  + +       H +G    + T+  ER +DW+ R  EL+G  +V++ R+E  S
Sbjct:    1 MGAVLA-EGGDNSRVPSCSALSTALFAATLASRYNDAAAVIRLLEVCGRGIADVRDDNGRTPLHHACRGDDAGLVRLLRRAGADPDAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEDTPLHLAVGFSSVPNDRVGTCTHPNTFHPGNAINHVASEPSLGVRCLEYVHQGRRRSASFPTNTLDLGPIQVRHGNLSCVKALVEGGAKLSRRNTLGFTPREDLLNSETMFARGRLPKVLRATLAYVQDAEASAPQPQWQASAPQSQSPTWTAQDG----YGSEDTPATAVSSRRSSIGGHFRHAFDANFDSDAQPPSEGERPLQQINTASASGKETEALHYYRHHAKGKAHATATDRLERNRDWDLR--ELQGSGNVLERRNEDES 385
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV96_ECTSI1.660e-4657.78Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L1T4_9PHAE9.240e-2538.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:714228..716734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue1.4e-43
Seed eggNOG ortholog2880.D7FV96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-14_000270.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1005
Cds size1005
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16447.1prot_C-linearis_contig89.16447.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 714228..716734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930699.6910498-CDS-C-linearis_contig89:714227..7142781622930699.6910498-CDS-C-linearis_contig89:714227..714278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 714228..714278 +
1690881203.9076765-CDS-C-linearis_contig89:714227..7142781690881203.9076765-CDS-C-linearis_contig89:714227..714278Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 714228..714278 +
1622930699.712037-CDS-C-linearis_contig89:714823..7150991622930699.712037-CDS-C-linearis_contig89:714823..715099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 714824..715099 +
1690881203.9209323-CDS-C-linearis_contig89:714823..7150991690881203.9209323-CDS-C-linearis_contig89:714823..715099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 714824..715099 +
1622930699.728019-CDS-C-linearis_contig89:715505..7156281622930699.728019-CDS-C-linearis_contig89:715505..715628Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 715506..715628 +
1690881203.928652-CDS-C-linearis_contig89:715505..7156281690881203.928652-CDS-C-linearis_contig89:715505..715628Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 715506..715628 +
1622930699.7444134-CDS-C-linearis_contig89:715875..7160551622930699.7444134-CDS-C-linearis_contig89:715875..716055Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 715876..716055 +
1690881203.9378371-CDS-C-linearis_contig89:715875..7160551690881203.9378371-CDS-C-linearis_contig89:715875..716055Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 715876..716055 +
1622930699.763037-CDS-C-linearis_contig89:716359..7167341622930699.763037-CDS-C-linearis_contig89:716359..716734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 716360..716734 +
1690881203.9479754-CDS-C-linearis_contig89:716359..7167341690881203.9479754-CDS-C-linearis_contig89:716359..716734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 716360..716734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16447.1

>prot_C-linearis_contig89.16447.1 ID=prot_C-linearis_contig89.16447.1|Name=mRNA_C-linearis_contig89.16447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=335bp
DRTLGWPEALPSNEYEQIIGATFAGEGESGSRAPSRSALSTALFAACLAS
QSSDAAAALHLLKMHGDGIGDVRDESGRTPLHHVCRADDVGVARLLCQAG
ADAAAQDSRGNSPLMVAAATGSLACLQLLVQQGSDLDCSNDDGDTPLHVA
VRHGNLSCVKILVEGGAWLSQRNTQGFTPREDILNAKPMFTRGRLPKVLR
ATLEYIERAEPNSPTWTAHDGEHDGYGSEATAASAAPRHNLTDYKHKHHH
HYRRDSLEQPSSGRGGQQLATTGGIAWPDDQPRHVQGSTRTSITEGGERE
QDWEPRGWELEGGRDVVDGRSEGRSEGGLSSGGGR
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mRNA from alignment at C-linearis_contig89:714228..716734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16447.1 ID=mRNA_C-linearis_contig89.16447.1|Name=mRNA_C-linearis_contig89.16447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2507bp|location=Sequence derived from alignment at C-linearis_contig89:714228..716734+ (Chordaria linearis ClinC8C monoicous)
GACCGGACACTCGGCTGGCCAGAGGCCCTACCCTCAAACGAGTACGAGCA
GGTGAATGGTTTGAATCGAGATTGTGGTTGGTGACAAGTCATGTCAATTA
AAATTCGTGTTAGTTTTGAGTCTCTTTCGCTTCGATTCAACGAGCTCTTC
CGTGTGCAGTTGAGAATGGACTACTATGTTCGGGAAGGGTACTACGCTGC
CGAACGGGTTCCATCCGAAATCGTGGTAAACCCTTGTGTTGTTCTTGCCG
GAGGTTTTCAATAGCCTGTGCTCGACCTTCAAAGTATTGGGAAACATCGC
TATTACCGAGCATATAAATCAAAGTATTAATGCTACCAGGTACATGTTAA
TGTTTTCGTGCTGCTTGATTGTTGCGTGCAACACGGTTCCCAATTGAAAC
AACACGGGCGTCAAATCGTGACGTGGGGATATGTTCAGACGGTGACTTCG
CGTGAACGAACGCCCTGCACGCGTCAAGCGTTAAACGTCGCCGCTGGATG
CGTCAACGTCAACGTCAACGCTTGCCCTACCCGTTCAGAACCAACGATCG
CCAACTCTCTCTCTCTCTCGCCGAACCGCTGCCTGCCATTCAACAGATCA
TAGGCGCTACCTTTGCTGGGGAAGGAGAGAGCGGTTCCCGAGCGCCCTCG
CGCTCGGCCCTATCCACAGCCCTCTTCGCCGCATGCTTGGCCTCACAATC
CAGCGATGCAGCAGCCGCGCTCCACCTTCTCAAAATGCATGGTGATGGCA
TAGGAGACGTGAGGGACGAGAGCGGTCGCACACCCCTCCATCATGTCTGC
CGCGCCGATGATGTTGGCGTGGCTCGACTTCTTTGCCAGGCTGGAGCCGA
TGCTGCGGCTCAAGACAGCCGGGTAAGGCCGAGTTGGAGGTCGCTTTTGT
TCGTAACTACCCTGCTGCTGTGAAGTTTGCATCGTGTAGGTGAAGGAAGA
GCCCGAAATGTTAAATTGTTTTCAAAACTGTCAGCTCTTGACCGTTTATC
CCGCGGCGTGAGCCTTTCATGGGCCATGGCAGACCTACTTCGTTTTGCGT
AGGCGAGCTGACTGCTCGTAAACTGCCAAAAGTGTGAGAAACGTCGCGGT
GAAAAACGCGCAAACCACCCACTGACCTCTGCTTTGTCCCCGCTGTCATG
GGTGGTGAGACAGCCAGTTCAGAAAATAAACAAATGTTCCAGGGGTAGCC
TGAAACTACGACTCACATGATCAAAACGTGCTCTATTGCAACCAATCAGC
AACGCGTTCCGGTGTCTGATATCTACAGGGAAATTCACCCTTGATGGTGG
CGGCCGCCACAGGGAGCTTGGCTTGTCTACAGCTCTTGGTGCAACAGGGA
AGCGATCTGGATTGCTCGAATGACGATGGCGACACACCTCTACACGTAGC
GGTGAGAAGCACTTTCGTTGCACGAATCGGATGTCTTGTCTACGGTGGTA
CTTGTTTACGGTACGGGTCTAAACTGCACCGTAACAGAGCACAGGGACAG
CACGGGCATATTGTTGACAGCTTTGGTGCCCTTATTCCTGAGTTTCTTGG
GTCGGTTGCACTATGCGCCTGTTTTGCCAACAACGACCGAAACATCGGAA
ATTGGTAGTTGACAAAGCACGCGATACTATGTTTTACGCCTTCCCCAGGT
AAGGCATGGAAACCTGTCGTGCGTGAAAATACTGGTGGAAGGAGGTGCTT
GGCTCAGCCAGCGCAACACGCAAGGCTTCACCCCTAGGGAAGATATACTC
AACGCGAAACCCATGTTCACCAGAGGACGGCTGCCCAAGGTCCTTCGAGC
AACCTTGGAATACATCGAACGTGCCGAGGTTGGTTAGATCCGACTAGTTG
TCTAGCAAAGCAGAGGACGGCTCCATCATGCACTACACTGGTTTCTTCTT
GAACACCGCTCACCGCTGCATCATATTTCCAATGAGTGCAAGTAGCGGTT
CCTTTGTTGCTGACTGCCCTACGTTCGTACCTCCTGTGAATCTGATAATC
TGATAATCTTCACCCATCGCTTGGTGGTGGGCATAGTGGGCATCGGCCGA
CCCTCCCTTCCCTGCGCGTGCGCCTAACGGCCGCCCTCCCACCTCCACCC
CCGCGCTTGCTGCCAATGCGTCGGCGGCACAGCCAAATTCCCCAACTTGG
ACAGCGCATGATGGAGAGCATGATGGATACGGATCGGAAGCAACGGCAGC
CTCGGCGGCACCTCGTCACAATCTCACCGACTACAAGCACAAGCACCACC
ATCACTACCGTCGTGACTCTCTCGAACAGCCTTCTTCTGGTCGCGGAGGG
CAGCAGCTCGCCACCACCGGTGGGATCGCGTGGCCTGACGACCAACCACG
CCACGTGCAAGGTAGCACACGCACGTCCATCACAGAGGGAGGAGAGCGCG
AACAGGATTGGGAGCCGCGCGGCTGGGAATTGGAAGGGGGCCGAGACGTT
GTGGATGGGCGGAGTGAAGGACGGTCTGAAGGAGGACTTTCTTCCGGCGG
TGGCAGG
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Coding sequence (CDS) from alignment at C-linearis_contig89:714228..716734+

>mRNA_C-linearis_contig89.16447.1 ID=mRNA_C-linearis_contig89.16447.1|Name=mRNA_C-linearis_contig89.16447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at C-linearis_contig89:714228..716734+ (Chordaria linearis ClinC8C monoicous)
GACCGGACACTCGGCTGGCCAGAGGCCCTACCCTCAAACGAGTACGAGCA
GGACCGGACACTCGGCTGGCCAGAGGCCCTACCCTCAAACGAGTACGAGC
AGATCATAGGCGCTACCTTTGCTGGGGAAGGAGAGAGCGGTTCCCGAGCG
CCCTCGCGCTCGGCCCTATCCACAGCCCTCTTCGCCGCATGCTTGGCCTC
ACAATCCAGCGATGCAGCAGCCGCGCTCCACCTTCTCAAAATGCATGGTG
ATGGCATAGGAGACGTGAGGGACGAGAGCGGTCGCACACCCCTCCATCAT
GTCTGCCGCGCCGATGATGTTGGCGTGGCTCGACTTCTTTGCCAGGCTGG
AGCCGATGCTGCGGCTCAAGACAGCCGGATCATAGGCGCTACCTTTGCTG
GGGAAGGAGAGAGCGGTTCCCGAGCGCCCTCGCGCTCGGCCCTATCCACA
GCCCTCTTCGCCGCATGCTTGGCCTCACAATCCAGCGATGCAGCAGCCGC
GCTCCACCTTCTCAAAATGCATGGTGATGGCATAGGAGACGTGAGGGACG
AGAGCGGTCGCACACCCCTCCATCATGTCTGCCGCGCCGATGATGTTGGC
GTGGCTCGACTTCTTTGCCAGGCTGGAGCCGATGCTGCGGCTCAAGACAG
CCGGGGAAATTCACCCTTGATGGTGGCGGCCGCCACAGGGAGCTTGGCTT
GTCTACAGCTCTTGGTGCAACAGGGAAGCGATCTGGATTGCTCGAATGAC
GATGGCGACACACCTCTACACGTAGCGGGAAATTCACCCTTGATGGTGGC
GGCCGCCACAGGGAGCTTGGCTTGTCTACAGCTCTTGGTGCAACAGGGAA
GCGATCTGGATTGCTCGAATGACGATGGCGACACACCTCTACACGTAGCG
GTAAGGCATGGAAACCTGTCGTGCGTGAAAATACTGGTGGAAGGAGGTGC
TTGGCTCAGCCAGCGCAACACGCAAGGCTTCACCCCTAGGGAAGATATAC
TCAACGCGAAACCCATGTTCACCAGAGGACGGCTGCCCAAGGTCCTTCGA
GCAACCTTGGAATACATCGAACGTGCCGAGGTAAGGCATGGAAACCTGTC
GTGCGTGAAAATACTGGTGGAAGGAGGTGCTTGGCTCAGCCAGCGCAACA
CGCAAGGCTTCACCCCTAGGGAAGATATACTCAACGCGAAACCCATGTTC
ACCAGAGGACGGCTGCCCAAGGTCCTTCGAGCAACCTTGGAATACATCGA
ACGTGCCGAGCCAAATTCCCCAACTTGGACAGCGCATGATGGAGAGCATG
ATGGATACGGATCGGAAGCAACGGCAGCCTCGGCGGCACCTCGTCACAAT
CTCACCGACTACAAGCACAAGCACCACCATCACTACCGTCGTGACTCTCT
CGAACAGCCTTCTTCTGGTCGCGGAGGGCAGCAGCTCGCCACCACCGGTG
GGATCGCGTGGCCTGACGACCAACCACGCCACGTGCAAGGTAGCACACGC
ACGTCCATCACAGAGGGAGGAGAGCGCGAACAGGATTGGGAGCCGCGCGG
CTGGGAATTGGAAGGGGGCCGAGACGTTGTGGATGGGCGGAGTGAAGGAC
GGTCTGAAGGAGGACTTTCTTCCGGCGGTGGCAGGCCAAATTCCCCAACT
TGGACAGCGCATGATGGAGAGCATGATGGATACGGATCGGAAGCAACGGC
AGCCTCGGCGGCACCTCGTCACAATCTCACCGACTACAAGCACAAGCACC
ACCATCACTACCGTCGTGACTCTCTCGAACAGCCTTCTTCTGGTCGCGGA
GGGCAGCAGCTCGCCACCACCGGTGGGATCGCGTGGCCTGACGACCAACC
ACGCCACGTGCAAGGTAGCACACGCACGTCCATCACAGAGGGAGGAGAGC
GCGAACAGGATTGGGAGCCGCGCGGCTGGGAATTGGAAGGGGGCCGAGAC
GTTGTGGATGGGCGGAGTGAAGGACGGTCTGAAGGAGGACTTTCTTCCGG
CGGTGGCAGG
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