prot_C-linearis_contig89.16446.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16446.1
Unique Nameprot_C-linearis_contig89.16446.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length207
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 13..37
e-value: 2.0E-4
score: 30.7
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 15..34
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 11..40
score: 9.179
NoneNo IPR availableGENE3D4.10.1060.10coord: 4..42
e-value: 1.4E-5
score: 26.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:701181..702598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16446.1mRNA_C-linearis_contig89.16446.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 701181..702600 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16446.1 ID=prot_C-linearis_contig89.16446.1|Name=mRNA_C-linearis_contig89.16446.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
GGGGRSSRNESNGAWTCPACSFCNRSGRSKCMRCSTKSPYPQWHEVLRRR
GATATNGDGGVSSGAAGGAVGHSGGGVGGEGGGRDFMSGGGSGGAADSQA
APFAGGSNFPPSGTLNMHRGGGVNSGATADLNAEEAGGGDDASDSAHGRG
GREARPRVEASGRLFGTALAGVGTTASARGSSRRTPAVAEAKEMPAAREE
RIAKAVE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2