mRNA_C-linearis_contig89.16446.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16446.1
Unique NamemRNA_C-linearis_contig89.16446.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:701181..702600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size623
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16446.1prot_C-linearis_contig89.16446.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 701181..702598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.7295818-CDS-C-linearis_contig89:701180..7012241622930689.7295818-CDS-C-linearis_contig89:701180..701224Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701181..701224 +
1690881198.441697-CDS-C-linearis_contig89:701180..7012241690881198.441697-CDS-C-linearis_contig89:701180..701224Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701181..701224 +
1622930689.7506564-CDS-C-linearis_contig89:701492..7016931622930689.7506564-CDS-C-linearis_contig89:701492..701693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701493..701693 +
1690881198.4533558-CDS-C-linearis_contig89:701492..7016931690881198.4533558-CDS-C-linearis_contig89:701492..701693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701493..701693 +
1622930689.769698-CDS-C-linearis_contig89:701992..7023061622930689.769698-CDS-C-linearis_contig89:701992..702306Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701993..702306 +
1690881198.4635668-CDS-C-linearis_contig89:701992..7023061690881198.4635668-CDS-C-linearis_contig89:701992..702306Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 701993..702306 +
1622930689.7872066-CDS-C-linearis_contig89:702536..7025981622930689.7872066-CDS-C-linearis_contig89:702536..702598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 702537..702598 +
1690881198.4744375-CDS-C-linearis_contig89:702536..7025981690881198.4744375-CDS-C-linearis_contig89:702536..702598Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 702537..702598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16446.1

>prot_C-linearis_contig89.16446.1 ID=prot_C-linearis_contig89.16446.1|Name=mRNA_C-linearis_contig89.16446.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
GGGGRSSRNESNGAWTCPACSFCNRSGRSKCMRCSTKSPYPQWHEVLRRR
GATATNGDGGVSSGAAGGAVGHSGGGVGGEGGGRDFMSGGGSGGAADSQA
APFAGGSNFPPSGTLNMHRGGGVNSGATADLNAEEAGGGDDASDSAHGRG
GREARPRVEASGRLFGTALAGVGTTASARGSSRRTPAVAEAKEMPAAREE
RIAKAVE
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mRNA from alignment at C-linearis_contig89:701181..702600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16446.1 ID=mRNA_C-linearis_contig89.16446.1|Name=mRNA_C-linearis_contig89.16446.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1420bp|location=Sequence derived from alignment at C-linearis_contig89:701181..702600+ (Chordaria linearis ClinC8C monoicous)
GGCGGCGGCGGCCGGTCATCGAGGAACGAGAGCAACGGCGCCTGGTGAGC
CAGTCCTACAAAGACTGAGCATAAGTAGCACTGTCTGGAGACTCGATTGT
TCGTCCATGCTGCCGGGTAGTGCAATACAACACCAGCCGGGCGGGCGGCT
GTGCTGCTATAGAGTACGTCGAGCTCTGCAATGCGGTCAAACAGCAGCTC
TCTCCGCCCAACCACCAAAGCAAGCAAGCAAGTACACCTGCAGAGATTCG
TGTGGTACTGACCCGTCCCCCATCGCCAACAACACGTACCATCTTGGTGT
TCCACACCCTAGGACCTGCCCGGCGTGCAGTTTTTGCAACCGCTCTGGCC
GCTCTAAGTGCATGAGGTGCTCGACCAAGAGTCCGTATCCGCAGTGGCAT
GAGGTACTACGCAGGCGTGGTGCCACCGCCACGAACGGTGACGGTGGCGT
GAGCTCTGGGGCGGCCGGCGGGGCTGTTGGGCACTCAGGCGGTGGCGTTG
GGGGAGAGGGCGGGTAAGTGAACATCGCACCTTTGCTGTCTCTGAGTGTT
CAGTTGTATCTTTTGAAGGGAGAGGCACACACTCATACTTTTGGTGCCGC
TGGGGGCTTGTGTTGGAGTTCGTTTGTGAGGGGTGAAAAAGCAAAGCCTT
GGGATATTTTCCCGCCTGAACAATGCACGTGTACGACCTTTCGGGTCATT
GGTTCCCGAGCTACCGGCGGAACAAGAACGAAGTTCCATTGTGATCGCTT
TGAGCGTGGCCCGTACCAGTAGACGTGATTCCCCCTCTCTCGCTCTCTTT
TGTGCCGTTCAGCGGAAGGGACTTCATGAGTGGGGGTGGCAGCGGCGGAG
CAGCGGACTCTCAGGCGGCGCCATTTGCGGGCGGCAGTAACTTCCCGCCG
TCTGGTACCCTCAACATGCACCGCGGTGGTGGCGTCAACTCCGGGGCGAC
AGCAGATTTGAACGCCGAAGAAGCGGGAGGAGGCGACGACGCGTCTGACT
CGGCCCACGGCCGCGGCGGTAGGGAAGCACGCCCCAGGGTGGAGGCAAGC
GGAAGGTTGTTTGGGACGGCGTTGGCGGGGGTGGGGACGACGGCCAGTGC
CAGGGGCAGCAGCCGACGAACGCCGGGTAAGCATGAGTCGGTATTGTAAT
GTAGGTGACTGGGGTGGGGGTACGTGCTAGGAGCGAGGAAGGTGGTCGTC
CGCTTGGCACATATTTGCATCTTTCTCTGGTAGCTTTACTTCGGCACGAC
GGGATGAGCTTCATCGTACAGCTCACCTGCTCTCGCTTGCCTTCTTTTCT
TGCCTTCCTTGCCCGCTATTTCTCGCCCTACTGTACGCTGCACTTGGCGA
CGGAAGCGGTAGCAGAGGCTAAGGAGATGCCAGCCGCACGCGAGGAGAGA
ATTGCCAAAGCGGTGGAGCA
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Coding sequence (CDS) from alignment at C-linearis_contig89:701181..702600+

>mRNA_C-linearis_contig89.16446.1 ID=mRNA_C-linearis_contig89.16446.1|Name=mRNA_C-linearis_contig89.16446.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig89:701181..702600+ (Chordaria linearis ClinC8C monoicous)
GGCGGCGGCGGCCGGTCATCGAGGAACGAGAGCAACGGCGCCTGGGCGGC
GGCGGCCGGTCATCGAGGAACGAGAGCAACGGCGCCTGGACCTGCCCGGC
GTGCAGTTTTTGCAACCGCTCTGGCCGCTCTAAGTGCATGAGGTGCTCGA
CCAAGAGTCCGTATCCGCAGTGGCATGAGGTACTACGCAGGCGTGGTGCC
ACCGCCACGAACGGTGACGGTGGCGTGAGCTCTGGGGCGGCCGGCGGGGC
TGTTGGGCACTCAGGCGGTGGCGTTGGGGGAGAGGGCGGGACCTGCCCGG
CGTGCAGTTTTTGCAACCGCTCTGGCCGCTCTAAGTGCATGAGGTGCTCG
ACCAAGAGTCCGTATCCGCAGTGGCATGAGGTACTACGCAGGCGTGGTGC
CACCGCCACGAACGGTGACGGTGGCGTGAGCTCTGGGGCGGCCGGCGGGG
CTGTTGGGCACTCAGGCGGTGGCGTTGGGGGAGAGGGCGGCGGAAGGGAC
TTCATGAGTGGGGGTGGCAGCGGCGGAGCAGCGGACTCTCAGGCGGCGCC
ATTTGCGGGCGGCAGTAACTTCCCGCCGTCTGGTACCCTCAACATGCACC
GCGGTGGTGGCGTCAACTCCGGGGCGACAGCAGATTTGAACGCCGAAGAA
GCGGGAGGAGGCGACGACGCGTCTGACTCGGCCCACGGCCGCGGCGGTAG
GGAAGCACGCCCCAGGGTGGAGGCAAGCGGAAGGTTGTTTGGGACGGCGT
TGGCGGGGGTGGGGACGACGGCCAGTGCCAGGGGCAGCAGCCGACGAACG
CCGGCGGAAGGGACTTCATGAGTGGGGGTGGCAGCGGCGGAGCAGCGGAC
TCTCAGGCGGCGCCATTTGCGGGCGGCAGTAACTTCCCGCCGTCTGGTAC
CCTCAACATGCACCGCGGTGGTGGCGTCAACTCCGGGGCGACAGCAGATT
TGAACGCCGAAGAAGCGGGAGGAGGCGACGACGCGTCTGACTCGGCCCAC
GGCCGCGGCGGTAGGGAAGCACGCCCCAGGGTGGAGGCAAGCGGAAGGTT
GTTTGGGACGGCGTTGGCGGGGGTGGGGACGACGGCCAGTGCCAGGGGCA
GCAGCCGACGAACGCCGGCGGTAGCAGAGGCTAAGGAGATGCCAGCCGCA
CGCGAGGAGAGAATTGCCAAAGCGGTGGAGCGGTAGCAGAGGCTAAGGAG
ATGCCAGCCGCACGCGAGGAGAGAATTGCCAAAGCGGTGGAG
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