prot_C-linearis_contig89.16437.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16437.1
Unique Nameprot_C-linearis_contig89.16437.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length491
Homology
BLAST of mRNA_C-linearis_contig89.16437.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 3.130e-155
Identity = 292/492 (59.35%), Postives = 360/492 (73.17%), Query Frame = 0
Query:    1 MVFTRKVAGFALLSLGLAARQAAAVENCLDLITAIGAASGTATATITLEADFTCEGNLEIGTSQNVEITSAETGPHILSIGSQFSGSTSTEASGGASLIINQGTLTLNGVNFATEXXXXXXXXXXXXXXXVVNCEFSLFHEGGFVDQGGAIFSDSSQSLDITSCTFKSNVALLNXXXXXXXXXXXXXXXXXXXSKNEVGTGELGNGAGGDVWAAPNVDLNIIDSSFSSSSAEYGGASIKCCGAEILRSNFTSTDTSGSTERHFGAVMVGGPGEDACDKELTVTGSTFSGCSVAAGLGEGGSLAIFDTTAKLIDCVFESSTGGAVLFTSTSADGQHKLDMTSCQFNENTNPSDAYAGVDAPQGTAVVTTNTGVSDGDT-VEMGTFFNMFCFANVPYECEFVYDGAEVVHEGEFKCHICDIEGTRQATGLDDDLVGATDRGVDS-SSDDKQGVVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 490
            M FTRK A  AL  LGLAARQA+AV  CL LITA+ A SGT T  + LE  FTCE  + +  SQ+V I+    G + +++G+ F+GST+T+A  G SL  N+GTL L+G+ FATE    XXXXXXXXXXX       L+  G F+ +GG I+SDS+ ++ I+  TFKSN+A   XXXXXXXXXXXXXXXXXXX  NEVGTG   +GAGGDV+A  NVDL +  ++FS+S+AEYGGA+I+CCGA I  + FT  DT         A++V  P +D C +EL ++ STFSGC+V +  G GGS+AIFDT+A + DC FESS G AVLF+S+S  G+H+L M   QFN NT P++AYA  D  QG A+V TNTGV+DG+T V MG F +M+CFAN PYECEFVYD +++VH GEFKC ICDIEG RQ +G DDDL+ A++R +D  SS D QG+VIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL
Sbjct:    1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGT--VELEGGFTCEAYITVAASQDVTIS----GAYTITLGAPFAGSTNTDA--GGSLFENEGTLKLDGITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIFLSRGGVIYSDSAGTISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXXALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYA-TDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483          
BLAST of mRNA_C-linearis_contig89.16437.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 5.390e-116
Identity = 244/465 (52.47%), Postives = 320/465 (68.82%), Query Frame = 0
Query:    1 MVFTRKVAGFALLSLGLAARQAAAVENCLDLITAIGAASGTATATITLEADFTCEGNLEIGTSQNVEITSAETGPHILSIGSQFSGSTSTEASGGASLIINQGTLTLNGVNFATEXXXXXXXXXXXXXXXVVNCEFSLFHEGGFVDQGGAIFSDSSQSLDITSCTFKSNVALLNXXXXXXXXXXXXXXXXXXXSKNEVGTGELGNGAGGDVWAAPNVDLNIIDSSFSSSSAEYGGASIKCCGAEILRSNFTSTDTSGSTERHFGAVMVGGPGEDACDKELTVTGSTFSGCSVAAGLGEGGSLAIFDTTAKLIDCVFESSTGGAVLFTSTSADGQHKLDMTSCQFNENTNPSDAYAGVDAPQGTAVVTTNTGVSDGDT-VEMGTFFNMFCFANVPYECEFVYDGAEVVHEGEFKCHICDIEGTRQATGLDDDLVGATDRGVDSSS-DDKQGVVIGLSLALGLTLVV 463
            M  +RK AG AL  LGLAARQA+AV  C  LITA+ A SGT TA   LE  FTC+ ++ +  SQ+V I+    G + +++G  F+GST T+A  G SL +N+GTL L+G+ FAT XXXXXXXXXXXXXXX       L+  G F+ +GG ++SDS+ ++ I+  TF SN+A   XXXXXXXXXXXXXXXXXXX  NEVGTG   +GAGGDV+   NV+L +  ++FS+S AEYGGA+I+CCGA I    F              A++V  P +D C ++L ++ STFSGC+V +  G GGS+AIFDT+A + DC FESS G AVLF+S+S  G+H+L M   QFN NT P++AY   D  QG A+V TNTGV+DG+T V MG F +++CFAN PYECEFVYD +++VH GEFKC ICDI+G +Q +G D DL G+ D+   S+S D K  ++IGLS AL L +++
Sbjct:    1 MELSRKSAGLALFFLGLAARQASAVTTCPALITAVEAISGTGTAE--LEGSFTCDTHITVAASQDVTIS----GAYTITLGPLFAGSTDTDA--GGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAFLSRGGVVYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXXALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYV-TDTEQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSWDSKDYIIIGLSAALALCIIL 456          
BLAST of mRNA_C-linearis_contig89.16437.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.680e-85
Identity = 171/396 (43.18%), Postives = 234/396 (59.09%), Query Frame = 0
Query:   41 TATATITLEADFTCEGNLEIGTSQNVEITSAETGPHILSIGSQFSGSTSTEASGGASLIINQGTLTLNGVNFATEXXXXXXXXXXXXXXXVVNCEFSLFHEGG--FVDQGGAIFSDSSQSLDITSCTFKSNVALLNXXXXXXXXXXXXXXXXXXXSKNEVGTGELGNGAGGDVWAAPNVDLNIIDSSFSSSSAEYGGASIKCCGAEILRSNFTSTDTSGSTERHFGAVMVGGPGEDACDKELTVTGSTFSGCSVAAGLGEGGSLAIFDTTAKLIDCVFESSTGGAVLFTSTSADGQHKLDMTSCQFNENTNPSDAYAGVDAPQGTAVVTTNTGVSDGDT-VEMGTFFNMFCFANVPYECEFVYDGAEVVHEGEFKCHICDIEGTRQ-ATGLDDDLV 432
            T T T+ LE+ FTC+ ++ +  SQ+V I+    G + +++G+ F+GST+T+A  G SL +N+GTL L+G+ FATE           XXXX       LF  GG  F+ +GG I+SDS   + I++ TFKSN+A                      + NEVGTG    GAGGDV+A  NV+L +  ++FS+S+AEY                                ++V  P +DAC +EL ++ + FSGCSV +  G GGS+AIFDT+A + DC FESS G AVLF+S+S  G+H+L M   QFN NT P++AYA  D  QG A+V TNTGV +G+T V MG F +M+CF N PYECEFVYD +++VH GEF C +C I+G RQ  +G DDD V
Sbjct:    2 TVTGTVELESGFTCDAHITVDASQDVTIS----GAYTITLGALFAGSTATDA--GGSLFVNEGTLELDGITFATEATDGNRAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDGEIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVNRPDQDACSRELDLSDTIFSGCSVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYA-TDTEQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSV 390          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16437.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVA4_ECTSI3.130e-15559.35Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FV99_ECTSI5.390e-11652.47Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FVA0_ECTSI2.680e-8543.18Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 471..490
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 449..470
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..448
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.779
NoneNo IPR availableTMHMMTMhelixcoord: 448..470
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 30..370

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:639518..644053 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16437.1mRNA_C-linearis_contig89.16437.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 639210..646957 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16437.1 ID=prot_C-linearis_contig89.16437.1|Name=mRNA_C-linearis_contig89.16437.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=491bp
MVFTRKVAGFALLSLGLAARQAAAVENCLDLITAIGAASGTATATITLEA
DFTCEGNLEIGTSQNVEITSAETGPHILSIGSQFSGSTSTEASGGASLII
NQGTLTLNGVNFATESKDGYRAIYNTGTLSVVNCEFSLFHEGGFVDQGGA
IFSDSSQSLDITSCTFKSNVALLNGGAVHVSGSETVTITSSSFSKNEVGT
GELGNGAGGDVWAAPNVDLNIIDSSFSSSSAEYGGASIKCCGAEILRSNF
TSTDTSGSTERHFGAVMVGGPGEDACDKELTVTGSTFSGCSVAAGLGEGG
SLAIFDTTAKLIDCVFESSTGGAVLFTSTSADGQHKLDMTSCQFNENTNP
SDAYAGVDAPQGTAVVTTNTGVSDGDTVEMGTFFNMFCFANVPYECEFVY
DGAEVVHEGEFKCHICDIEGTRQATGLDDDLVGATDRGVDSSSDDKQGVV
IGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence