prot_C-linearis_contig89.16408.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16408.1
Unique Nameprot_C-linearis_contig89.16408.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length681
Homology
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BLAST of mRNA_C-linearis_contig89.16408.1 vs. uniprot
Match: D8LH88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH88_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 1.810e-83
Identity = 369/705 (52.34%), Postives = 430/705 (60.99%), Query Frame = 0 
Query:   16 LVAVLTVSCSNV-LSFIRPQQTCSSISPLGHTFSAKSSIMKRQAATAIPGGVTSGNVERGKEPKLSAPATSAETDTPSPKQPLLPPIVDQNKD-----APLKEEKAATAVAAGEDASQLETKTVGEAKPTAATVGQDAKPSVIPKEKEVSSAAPAVVGTDSSSVSXXXXXXXXXXXXXXXXXXXXXXXX-----------------KKDGV--GPETTAAEKVLTLLEIGLVDREEMAAYYEALSELERTTQEAKVAAAATATTPVNPAKPSASTPFTAEDGPLSLVPFPIICAALGAAGTHALHLTGDLSTATSVFGAVAGATLGALVVSGDDAGGRAARAVGSVVARSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPGQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEVVKETPKEAAKR-------LKEVVAGPGENLTAFVTRASKKGAGKRKERQKVQPKSVPSA---RARQESTVVAPSKQDTHVEPEGIPAEELEAKLLSVRKALERFDDVKNRIEEAHTSDTLKKTVGMTRSMDMAAEREKGEQARAAAQKAKHLQVESEETPDSRPP----PSAASKSVAPPTGLKATDQDRMKQVAARLLEKASQRATEAKTGLKAAAESARREADLASIAAAAAT---GAEQKASQEAVA 678
            L+ VLT+SCS   LSF+RP    SS+  L    SAK+S+ +RQAA  IPGGV SG +ERG      AP +     +P P Q   P     N       +       AT V  G+ AS    KT    K  AA+ G     +V PK       A    GT   S  XXXXXXXXXXXXXXXXXXXXXX                   KK G+  GPETTAAEKVLTL+EIGLVD+EE + YYEALS+LERTTQEAK                 +++PF+ ++GPLSLVPFP +CAALGAAGTH+LHL G L TA SVFGAVAG  LG LVV GDD  GRAARA G  +ARSAG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +LPG +A                 XXXXXXXXXXXXXXXXXXX                      L + V+ PG+ LTA  + AS   A + +  +K    + P+A   +A Q ST  A  ++    EPEGIP +ELEAK+ SVRKALERFD VK+RIEEA+TSDT++KTV MTR MDM+AEREK E+ARAAA++    +V   +   S  P    PS AS +       K  DQDR KQVA +LLEKASQRATEAK GLKAAA S+RREA+    A+  AT   GA++K  QE VA
Sbjct:    8 LLLVLTLSCSESGLSFLRPH--VSSLPHLSQAPSAKTSVTRRQAAATIPGGVPSGKLERG------APTSKTSDQSPFPNQSPPPXXXSVNPTEATPGSXXXXXXXATQVK-GKGASGTP-KTAAAGKAAAASKGTVGPSAVSPK-------AAVAAGTTQGSXXXXXXXXXXXXXXXXXXXXXXXXAVSAKEREEVTATDKPTEDKKKGLKAGPETTAAEKVLTLVEIGLVDKEEASTYYEALSDLERTTQEAKAXXXXXXXXXXXXXXXXSASPFSPQEGPLSLVPFPAVCAALGAAGTHSLHLAGALGTAFSVFGAVAGVALGGLVVIGDDPLGRAARAAGLALARSAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVTALPGAVATKAADGARGALQDTSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAVSSPGKTLTALASGASSLVAQQIESSKKKARPAAPAASTKKAPQASTAAASVEEKQ--EPEGIPIDELEAKMSSVRKALERFDTVKSRIEEANTSDTMRKTVSMTRGMDMSAEREKNEEARAAAERPNEARVNGNKKSTSARPGGEMPSVASTTTTRAPKPKTMDQDRRKQVAEKLLEKASQRATEAKAGLKAAAASSRREAENTQAASPTATPIGGADKKTPQETVA 693
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH88_ECTSI1.810e-8352.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 522..542
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..680
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..29
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..24
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.597
NoneNo IPR availableTMHMMTMhelixcoord: 13..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:321165..325382 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16408.1mRNA_C-linearis_contig89.16408.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 320516..325556 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16408.1 ID=prot_C-linearis_contig89.16408.1|Name=mRNA_C-linearis_contig89.16408.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=681bp
MRVVACASRRSRVTLLVAVLTVSCSNVLSFIRPQQTCSSISPLGHTFSAK
SSIMKRQAATAIPGGVTSGNVERGKEPKLSAPATSAETDTPSPKQPLLPP
IVDQNKDAPLKEEKAATAVAAGEDASQLETKTVGEAKPTAATVGQDAKPS
VIPKEKEVSSAAPAVVGTDSSSVSAAGGAVEPVVAAEGKAATSVEKKKKK
DGVGPETTAAEKVLTLLEIGLVDREEMAAYYEALSELERTTQEAKVAAAA
TATTPVNPAKPSASTPFTAEDGPLSLVPFPIICAALGAAGTHALHLTGDL
STATSVFGAVAGATLGALVVSGDDAGGRAARAVGSVVARSAGTAGGAVGK
GLSESVGGVAGAAASAVEGAIVKAPANLVAGLASSTSSAVSSAVGSVVSL
PGQLAAKAVDGAKGVLQNTSEAVARKATEAAVGALQSTSEAALEVVKETP
KEAAKRLKEVVAGPGENLTAFVTRASKKGAGKRKERQKVQPKSVPSARAR
QESTVVAPSKQDTHVEPEGIPAEELEAKLLSVRKALERFDDVKNRIEEAH
TSDTLKKTVGMTRSMDMAAEREKGEQARAAAQKAKHLQVESEETPDSRPP
PSAASKSVAPPTGLKATDQDRMKQVAARLLEKASQRATEAKTGLKAAAES
ARREADLASIAAAAATGAEQKASQEAVASR*
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