prot_C-linearis_contig88.16347.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16347.1
Unique Nameprot_C-linearis_contig88.16347.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length153
Homology
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BLAST of mRNA_C-linearis_contig88.16347.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-24
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0 
Query:   79 MGYQLDLDRSCLVTASEVDIPIDLASGVPLVCQWFCDACASTVTGVVAATAARRQRQ 135
            MGYQLDLDRSCL+TAS+VDIPID  +G+P+VCQWFCD+C+STVTGVVAATA RRQ++
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQR 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI1.800e-2478.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 33..118
e-value: 5.8E-4
score: 29.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 14..119
e-value: 1.9E-7
score: 33.0
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 34..117
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 31..120
score: 9.045
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 24..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:327208..328268 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16347.1mRNA_C-linearis_contig88.16347.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 325654..328317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16347.1 ID=prot_C-linearis_contig88.16347.1|Name=mRNA_C-linearis_contig88.16347.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=153bp
MALMDSMIHGGGGGAVESAGEEESPPSSSSSSACAICGETDQKHEGSTSG
GGDGGAAGAEESFALRCNSCRRWYHPWCMGYQLDLDRSCLVTASEVDIPI
DLASGVPLVCQWFCDACASTVTGVVAATAARRQRQSSGSNRKTAKHGRRD
TT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD