mRNA_C-linearis_contig88.16347.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16347.1
Unique NamemRNA_C-linearis_contig88.16347.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16347.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.410e-21
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 2 
Query:  284 MGYQLDLDRSCLVTASEVDIPIDLASGVPLVCQWFCDACASTVTGVVAATAARRQRQ 454
            MGYQLDLDRSCL+TAS+VDIPID  +G+P+VCQWFCD+C+STVTGVVAATA RRQ++
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQR 57
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI1.410e-2178.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:325654..328317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-01_009900.1
Exons3
Model size1822
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16347.1prot_C-linearis_contig88.16347.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 327208..328268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.2456033-UTR-C-linearis_contig88:325653..3267621622930680.2456033-UTR-C-linearis_contig88:325653..326762Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 325654..326762 -
1690881193.1458275-UTR-C-linearis_contig88:325653..3267621690881193.1458275-UTR-C-linearis_contig88:325653..326762Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 325654..326762 -
1622930680.2622664-UTR-C-linearis_contig88:327002..3272071622930680.2622664-UTR-C-linearis_contig88:327002..327207Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 327003..327207 -
1690881193.1602879-UTR-C-linearis_contig88:327002..3272071690881193.1602879-UTR-C-linearis_contig88:327002..327207Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 327003..327207 -
1622930680.312041-UTR-C-linearis_contig88:328268..3283171622930680.312041-UTR-C-linearis_contig88:328268..328317Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 328269..328317 -
1690881193.194079-UTR-C-linearis_contig88:328268..3283171690881193.194079-UTR-C-linearis_contig88:328268..328317Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 328269..328317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.2814105-CDS-C-linearis_contig88:327207..3272441622930680.2814105-CDS-C-linearis_contig88:327207..327244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 327208..327244 -
1690881193.1766748-CDS-C-linearis_contig88:327207..3272441690881193.1766748-CDS-C-linearis_contig88:327207..327244Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 327208..327244 -
1622930680.2946422-CDS-C-linearis_contig88:327846..3282681622930680.2946422-CDS-C-linearis_contig88:327846..328268Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 327847..328268 -
1690881193.185393-CDS-C-linearis_contig88:327846..3282681690881193.185393-CDS-C-linearis_contig88:327846..328268Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 327847..328268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16347.1

>prot_C-linearis_contig88.16347.1 ID=prot_C-linearis_contig88.16347.1|Name=mRNA_C-linearis_contig88.16347.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=153bp
MALMDSMIHGGGGGAVESAGEEESPPSSSSSSACAICGETDQKHEGSTSG
GGDGGAAGAEESFALRCNSCRRWYHPWCMGYQLDLDRSCLVTASEVDIPI
DLASGVPLVCQWFCDACASTVTGVVAATAARRQRQSSGSNRKTAKHGRRD
TT*
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mRNA from alignment at C-linearis_contig88:325654..328317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16347.1 ID=mRNA_C-linearis_contig88.16347.1|Name=mRNA_C-linearis_contig88.16347.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2664bp|location=Sequence derived from alignment at C-linearis_contig88:325654..328317- (Chordaria linearis ClinC8C monoicous)
CGCCTTCGTCGTTGGTCGCCGTGTCGCCGTGCGCGGTCTCGGCCGCTGCA
TGGCACTGATGGACAGCATGATCCATGGCGGGGGAGGAGGAGCGGTTGAA
TCTGCCGGAGAGGAGGAGTCACCGCCGTCATCGTCGTCTTCATCGGCCTG
TGCAATCTGCGGCGAGACCGACCAAAAACACGAAGGATCGACCAGCGGCG
GCGGCGACGGCGGAGCCGCCGGGGCTGAGGAGTCGTTTGCTCTCAGGTGC
AACAGCTGCCGGCGCTGGTACCACCCGTGGTGCATGGGCTACCAGCTGGA
CCTCGACCGATCGTGCTTGGTCACGGCGTCCGAGGTGGACATCCCTATCG
ACCTGGCCTCCGGCGTCCCACTGGTATGCCAGTGGTTCTGCGACGCGTGC
GCCTCGACGGTGACGGGCGTGGTCGCGGCGACGGCGGCCAGGCGCCAGCG
ACAAAGCTCCGGGTCCAACAGGTGAACGGACGGGTCTGGTGTGTGCACGC
GTCGTCAGAGAACCATCCTCGTTTCCACCCCCCTTTGTCTCTTGCCTGCC
TCACTGGCTGAGTCGTTTGAAGTTGAAGCCGGCGCCTGTTGTCGCCATTG
TTGTATTTGTACAGCAGGGCAGGCCTTGGAACAGCGCACGCCGCACTACG
GTTGTATTCTTGTACCCTCTAAGCAATCATTTGATTAAAGTATTGGATTT
GGATGGGGCCTCCTGCCCACGGCAGGGGATCTCGCCCATAGATAGTTCGT
TCGCCGCACAACTCGATGGGTGGGTGGGACCGACGATTCTTTTCTTTTTG
GTCTAGTCTTGAGCACTTTTAGAGGGGAGGAGAGAAGGAGACAGAATGAT
CTCGTGGGCAGTCAGTTACAGGTATTGGGGGTTCCGCGATTCTCGCTCCC
TCCGTGCCGGATTTACCGAGATTTACTGAGCCCCTTATATTTCTGTAGTG
CTGGTTTGGATTTTGGACTCTCGACCAAGTCTGCCTGTGGTTCCTGCAAG
TTATAATAGTATGCTCGCATCGACCCCACCTGCCGTGCCGCGTGCTCCCT
CTCGCCCCGCCCCGTGTGTGCAGGAAAACAGCGAAACATGGGAGACGCGA
CACCACATAAGTTGATCAACAGAGACTACGTAGATCTATGTACTGTGATA
TACCGAAGATTTTGCACTGGAGGCTTGTGCGGGTGTATGGAGCAGAACCA
GACGCGGTTGTGGACTACAATATGCCCCCCTTGTGTTGGAGCGTGGACGA
GTTGGGTAATTCATTCGGAATGGTGCATCGCGAGCATCTATGTACACCAA
CTCCGTGTACCCGAGGTGAGAAAGCATTTAACCTTGTCCTGGTTGTTGGT
CGAAATACCCACGGGATTCGTTGCGTTTGCTCTGTTGTTTTGCAGAGGAT
GGATTATTCTCTGCGCAAAGATCACGCGCACCTTTTGTTGCGCCACCTGC
TGAGTTTCACGCCATCGGGATGCGTATTATGTGGACGTGACACCTCGGTC
GACAAGTCCTTATACTCCCAGCACTCTGTTTCGCTGTTTCCCTTTCCGAC
AGCAGGGTTGTTCGCGTGACACCGGCGTTCGTCGAGACGGCCTTTTACAT
TCGACAGGGTGGAAGCACAGGCGTTTGCGTGTACTCTGGGGTGTCGTGCT
CCGCCAGCTGTGCGGCGTCTTTTTGTACGGGCACAGGACTAGCTTTCATT
TTGTCTGTGGGGCCTGGCGAATGTTGCGTTTTCTGGGAACCCCCTTTAGG
AGTTCCCACGCGTCCGCCGGATGTACTCGGCGTGTCGCGAAAACGTGTCT
CGATTCGAGGAAACCACACTCCAGGTATAAGTTTACATTACGGTTGTTGT
TCTTGAGTCGAGGCTCAAGGGGGCAATGATGGGGGCGGTGACACTTTAAG
GTCTGCTGCTTGAAAGCGCCGCTGTGCAGACACTTGACTATTAATAGGTC
GTCGGGAGCGAAAAAAGAAAAAAAGAGTGCTGTGGAGTAATCATGGTGAT
GTCACCATTTGTAGCGCACGTGCTGCCGTTGTTGTTCTCGCCATCGTTGT
ATCGATTGATCTCGTATACCGTATGTACAAGGCTTGATTGATACCATGTT
TGCTTTCAAGGCGGTGAGTGATAGTTTCCCTTTCAAGCCAAAAGCCCCGC
GGAAGTGTCTGATGCTGAGTCTGAGTCGGACTCTTCTCCGCTCTTATCGC
GCATGATGCTCGTGTTGCCCTTGCTCTGCTTTCGTGCAGCCCGGAGAGTC
TTGCTGATACGCTTTCTTGTAGTCTCGTCCACCGCCTCATCATACGATCG
ACCTTGCCAATCGATCCATCAAAAAGGAAAAGATGATGTTTAAAGCAAGA
TCTACCTGGGTGCAGTAGGTAGTTCTCAGTTTTCAAGGATTGATGTACAA
ATACGTCAATTTTCCTTTCAGATAGTTGGCGGCTTCGCCTCCCTTAACTA
ACACCCTGCAAAGGCGTGTGGTATTAGTGTGTGTATCCGGGCTGTGCGAA
ACTCTCAACAAGTGCCGACACATTTGTATACCATCAACAGAGCTGGTGAC
GCATGTGAAAGGCCATTGTATTTTGTGATTCACGTTTCGGCTCTGTAACG
TTTTCGTTTTTTTCTTCACACCTGGCCTCGTGTCCCGATGTGCAAGTTTT
AGTTTTCCCACCCC
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Coding sequence (CDS) from alignment at C-linearis_contig88:325654..328317-

>mRNA_C-linearis_contig88.16347.1 ID=mRNA_C-linearis_contig88.16347.1|Name=mRNA_C-linearis_contig88.16347.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at C-linearis_contig88:325654..328317- (Chordaria linearis ClinC8C monoicous)
ATGGCACTGATGGACAGCATGATCCATGGCGGGGGAGGAGGAGCGGTTGA
ATCTGCCGGAGAGGAGGAGTCACCGCCGTCATCGTCGTCTTCATCGGCCT
GTGCAATCTGCGGCGAGACCGACCAAAAACACGAAGGATCGACCAGCGGC
GGCGGCGACGGCGGAGCCGCCGGGGCTGAGGAGTCGTTTGCTCTCAGGTG
CAACAGCTGCCGGCGCTGGTACCACCCGTGGTGCATGGGCTACCAGCTGG
ACCTCGACCGATCGTGCTTGGTCACGGCGTCCGAGGTGGACATCCCTATC
GACCTGGCCTCCGGCGTCCCACTGGTATGCCAGTGGTTCTGCGACGCGTG
CGCCTCGACGGTGACGGGCGTGGTCGCGGCGACGGCGGCCAGGCGCCAGC
GACAAAGCTCCGGGTCCAACAGATGGCACTGATGGACAGCATGATCCATG
GCGGGGGAGGAGGAGCGGTTGAATCTGCCGGAGAGGAGGAGTCACCGCCG
TCATCGTCGTCTTCATCGGCCTGTGCAATCTGCGGCGAGACCGACCAAAA
ACACGAAGGATCGACCAGCGGCGGCGGCGACGGCGGAGCCGCCGGGGCTG
AGGAGTCGTTTGCTCTCAGGTGCAACAGCTGCCGGCGCTGGTACCACCCG
TGGTGCATGGGCTACCAGCTGGACCTCGACCGATCGTGCTTGGTCACGGC
GTCCGAGGTGGACATCCCTATCGACCTGGCCTCCGGCGTCCCACTGGTAT
GCCAGTGGTTCTGCGACGCGTGCGCCTCGACGGTGACGGGCGTGGTCGCG
GCGACGGCGGCCAGGCGCCAGCGACAAAGCTCCGGGTCCAACAGGAAAAC
AGCGAAACATGGGAGACGCGACACCACATAAGAAAACAGCGAAACATGGG
AGACGCGACACCACATAA
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