prot_C-linearis_contig88.16329.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16329.1
Unique Nameprot_C-linearis_contig88.16329.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length76
Homology
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 7.670e-28
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 0 
Query:    1 MVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGRYKKSSQMAARLAALCGILEI 70
            M+KAGRLLEV G TISH+GC+NHRMESTTSSVFNGRSL A+ LARTLVGRYKKSSQMAARL  LCGIL++
Sbjct:  117 MIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQM 186
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.230e-22
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0 
Query:    1 MVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGRYKKSSQMAARLAALCGILEI 70
            MVKAGRLLEVGG  + H+GC+NHRMESTTSSVFNG+SL A++ AR +VGRYK+SSQM+ RLA   GIL++
Sbjct:  153 MVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKL 222
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCS5_ECTSI7.670e-2882.86Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.230e-2270.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:88502..88729 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16329.1mRNA_C-linearis_contig88.16329.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 88470..88729 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16329.1 ID=prot_C-linearis_contig88.16329.1|Name=mRNA_C-linearis_contig88.16329.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
MVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGR
YKKSSQMAARLAALCGILEIVALCV*
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