mRNA_C-linearis_contig88.16329.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16329.1
Unique NamemRNA_C-linearis_contig88.16329.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.700e-35
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:    6 ACVTDCEPSMVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGRYKKSSQMAARLAALCGILEI 242
            ACVTDCEPSM+KAGRLLEV G TISH+GC+NHRMESTTSSVFNGRSL A+ LARTLVGRYKKSSQMAARL  LCGIL++
Sbjct:  108 ACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLGALGLARTLVGRYKKSSQMAARLVQLCGILQM 186
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.580e-31
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 3 
Query:    3 TACVTDCEPSMVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGRYKKSSQMAARLAALCGILEI 242
            TACVTDCEPSMVKAGRLLEVGG  + H+GC+NHRMESTTSSVFNG+SL A++ AR +VGRYK+SSQM+ RLA   GIL++
Sbjct:  143 TACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLGALAKARAVVGRYKRSSQMSGRLAVFIGILKL 222
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.220e-13
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3 
Query:    6 ACVTDCEPSMVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSL-RAVSLARTLVGRYKKSSQMAARLAALCGILEI 242
            A  TDCEP MVKAGRLLE   G +SH+GC  HR ES TS  F G  + +A++L R +V RY  SSQ + RL  +C I+++
Sbjct:   61 ATTTDCEPFMVKAGRLLEENEG-VSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQV 139
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.070e-13
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:    6 ACVTDCEPSMVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSL-RAVSLARTLVGRYKKSSQMAARLAALCGILEI 242
            A  TDCEPSMVKAGRLLE   G ++H+GC  HR+ES TS  F G  + +A++LAR +V RY  SSQ + RL  +  I+++
Sbjct:  117 ATTTDCEPSMVKAGRLLEENEG-VTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQV 195
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.130e-12
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 3 
Query:    3 TACVTDCEPSMVKAGRLLEVGGGTIS-HVGCANHRMESTTSSVFNGRSLRAVS-LARTLVGRYKKSSQMAARL 215
            TA  TDCEPSMVK GRLL  G  T+S  +GC N+R+EST+S VFNG  ++ V  LAR LV RY  SSQ A RL
Sbjct:  107 TAVTTDCEPSMVKMGRLL-AGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRL 178
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BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.140e-12
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:    6 ACVTDCEPSMVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSL-RAVSLARTLVGRYKKSSQMAARLAALCGILEI 242
            A  TDCE SMVKAGRLLE   G ++H+GC  HR+ES TS  F G  + +A++LAR +V RY  SSQ + RL  +C I+++
Sbjct:   73 AITTDCELSMVKAGRLLEENEG-VTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQV 151
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.700e-3584.81Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE6.580e-3173.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE7.220e-1351.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE8.070e-1351.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE2.130e-1260.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE2.140e-1251.25Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:88470..88729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size260
Cds size228
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.77335-UTR-C-linearis_contig88:88469..885011622930676.77335-UTR-C-linearis_contig88:88469..88501Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 88470..88501 +
1690881191.1776106-UTR-C-linearis_contig88:88469..885011690881191.1776106-UTR-C-linearis_contig88:88469..88501Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 88470..88501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.787554-CDS-C-linearis_contig88:88501..887291622930676.787554-CDS-C-linearis_contig88:88501..88729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 88502..88729 +
1690881191.1878297-CDS-C-linearis_contig88:88501..887291690881191.1878297-CDS-C-linearis_contig88:88501..88729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 88502..88729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16329.1prot_C-linearis_contig88.16329.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 88502..88729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16329.1

>prot_C-linearis_contig88.16329.1 ID=prot_C-linearis_contig88.16329.1|Name=mRNA_C-linearis_contig88.16329.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=76bp
MVKAGRLLEVGGGTISHVGCANHRMESTTSSVFNGRSLRAVSLARTLVGR
YKKSSQMAARLAALCGILEIVALCV*
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mRNA from alignment at C-linearis_contig88:88470..88729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16329.1 ID=mRNA_C-linearis_contig88.16329.1|Name=mRNA_C-linearis_contig88.16329.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=260bp|location=Sequence derived from alignment at C-linearis_contig88:88470..88729+ (Chordaria linearis ClinC8C monoicous)
TGACTGCATGCGTCACCGATTGCGAGCCGTCTATGGTCAAGGCGGGTCGC
CTGCTTGAGGTGGGCGGGGGTACGATTTCGCACGTCGGCTGCGCCAACCA
CCGCATGGAATCGACGACGTCATCCGTGTTCAACGGCAGGAGTCTGCGCG
CTGTGAGCCTTGCGCGGACGCTAGTAGGGCGTTACAAGAAGTCGAGCCAG
ATGGCAGCTCGACTCGCTGCCCTGTGCGGCATCCTCGAGATAGTCGCGCT
CTGCGTGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig88:88470..88729+

>mRNA_C-linearis_contig88.16329.1 ID=mRNA_C-linearis_contig88.16329.1|Name=mRNA_C-linearis_contig88.16329.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at C-linearis_contig88:88470..88729+ (Chordaria linearis ClinC8C monoicous)
ATGGTCAAGGCGGGTCGCCTGCTTGAGGTGGGCGGGGGTACGATTTCGCA
CGTCGGCTGCGCCAACCACCGCATGGAATCGACGACGTCATCCGTGTTCA
ACGGCAGGAGTCTGCGCGCTGTGAGCCTTGCGCGGACGCTAGTAGGGCGT
TACAAGAAGTCGAGCCAGATGGCAGCTCGACTCGCTGCCCTGTGCGGCAT
CCTCGAGATAGTCGCGCTCTGCGTGTGAATGGTCAAGGCGGGTCGCCTGC
TTGAGGTGGGCGGGGGTACGATTTCGCACGTCGGCTGCGCCAACCACCGC
ATGGAATCGACGACGTCATCCGTGTTCAACGGCAGGAGTCTGCGCGCTGT
GAGCCTTGCGCGGACGCTAGTAGGGCGTTACAAGAAGTCGAGCCAGATGG
CAGCTCGACTCGCTGCCCTGTGCGGCATCCTCGAGATAGTCGCGCTCTGC
GTGTGA
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