prot_C-linearis_contig87.16313.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig87.16313.1
Unique Name	prot_C-linearis_contig87.16313.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	556

Homology

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BLAST of mRNA_C-linearis_contig87.16313.1 vs. uniprot
Match: D7FH00_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH00_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 3.470e-116
Identity = 223/409 (54.52%), Postives = 265/409 (64.79%), Query Frame = 0

Query:  144 QAADALAGGADDGGVVAVRGRMRRSL-SDLEAYVDSSEPCATRMEVTASECDFENRQTLEWGYGEGDSSSTCETALPETTTIKCDHVAWGSGEGIAIGILAGAGMTVSLFFWVALWRYRKSRTVRLGQPALCKTVIAGICITCLSALALLGASEDLNCALGLWGYSLGFDLAFGAVAVKLWCSLSAAESSPKFTRVRLTTRKVLAMAGVIIAADAVVLARWTATFGDTCDAQYEAVGGVGTSGVMAYVRRNSCISCSHVLFWAWIGLKVVLVLLCCYVSLRGRKAQSSVSDSSSFMFRGIGMAVYNLAMAGLLVGAVVWADADAQVRRTTEAVAIVLAGVGTLLSILAPKILRAKQELEGKALVGPSAVV--TGPN--GS-RDAPFGVGAGDLFGDGEEGGPRTSTPSG 546
            +A  A+ GG  DGG +      RRSL  DLEAYVDS+E CA+RME T S+CDF+NRQTLEW YGEGD++  CET LPE  ++KCDHV W SGEGIAIGILAG G+ +SL FW AL RY++SR VRLGQPAL KT + GI +T LS  ALLGA+ DL CAL LWGYS GFDLAFGA+ +K+  + SAAES                                              VGG       A++ R+SC+SC+H L W+WI LKVVLVL CCYV  + RK Q  + D+      GIGMA YNL +AG+LV AVVWA+A+AQVRRTTE VAI+LAGVG L  +L  ++LRAKQELEGKALVGPSA    TGP   GS  DA +GVG   + GD E   PRT+TPSG
Sbjct:   42 EAVAAVLGG--DGGSINDGFDQRRSLFEDLEAYVDSNEACASRMEYTLSQCDFQNRQTLEWSYGEGDNALNCETPLPEGGSVKCDHVEWSSGEGIAIGILAGVGVALSLCFWGALSRYKQSRVVRLGQPALSKTFVVGIGVTFLSIFALLGATTDLTCALRLWGYSAGFDLAFGALTLKMRSACSAAES----------------------------------------------VGGG------AFITRSSCVSCNHGLMWSWIALKVVLVLFCCYVRFQARKFQDYMRDNG-----GIGMATYNLGVAGILVAAVVWAEANAQVRRTTEGVAILLAGVGVLFPVLGTRVLRAKQELEGKALVGPSAAAAATGPGTGGSVGDALYGVGERAMDGD-EYPEPRTTTPSG 390

[Close]

BLAST of mRNA_C-linearis_contig87.16313.1 vs. uniprot
Match: A0A6H5K1C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 9.970e-22
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 0

Query:  444 MAVYNLAMAGLLVGAVVWADADAQVRRTTEAVAIVLAGVGTLLSILAPKILRAKQELEGKALVGPSAVV----TGPNGSR---DAPFGVGAGDLFGDGEEGGPRTSTPSGVSSVNG 552
            MA YNL +AG+LV AVVWA+A+AQVRRTTE VAI+LAGVG L  +L  ++LRAKQELEGKALV PSA      TGP  S    DA  GVG   + GD E   PRT+TPSGVSSV G
Sbjct:    1 MATYNLGVAGILVAAVVWAEANAQVRRTTEGVAILLAGVGVLFPVLGTRLLRAKQELEGKALVAPSAAAAAAATGPGTSGSVGDALRGVGERAMDGD-EYPEPRTTTPSGVSSVGG 115

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig87.16313.1 vs. uniprot

BLAST of mRNA_C-linearis_contig87.16313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FH00_ECTSI	3.470e-116	54.52	G_PROTEIN_RECEP_F3_4 domain-containing protein n=1...	[more]
A0A6H5K1C2_9PHAE	9.970e-22	62.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 249..493 e-value: 1.3E-26 score: 93.8
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 235..493 score: 14.257
IPR002455	GPCR family 3, GABA-B receptor	PANTHER	PTHR10519	GABA-B RECEPTOR	coord: 220..493
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..29
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 304..324
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 272..292
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 474..494
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 442..462
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 463..473
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 13..24
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 261..271
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 325..344
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..12
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 345..365
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 495..556
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 401..422
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 237..260
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 293..303
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..236
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 25..29
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 423..441
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 366..400
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..29 score: 0.685
None	No IPR available	TMHMM	TMhelix		coord: 271..293
None	No IPR available	TMHMM	TMhelix		coord: 345..367
None	No IPR available	TMHMM	TMhelix		coord: 437..459
None	No IPR available	TMHMM	TMhelix		coord: 402..424
None	No IPR available	TMHMM	TMhelix		coord: 474..496
None	No IPR available	TMHMM	TMhelix		coord: 303..325
None	No IPR available	TMHMM	TMhelix		coord: 236..258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig87	contig	C-linearis_contig87:671839..681737 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig87.16313.1	mRNA_C-linearis_contig87.16313.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig87 671839..681961 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig87.16313.1 ID=prot_C-linearis_contig87.16313.1|Name=mRNA_C-linearis_contig87.16313.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=556bp
MSRLQGGWRLPRLTLAGAALAMVFQWCSGGVHVEGGAMAARGSIPDGVAL
ASPTDVVAASSTPSVEMEVEMEQEVVSFAEATDKTDKTAVTFHNAGRRPR
RSRSRSQRRRRHLRSSFSGAGHGAGDGAGVPAERRWSFGSSQSQAADALA
GGADDGGVVAVRGRMRRSLSDLEAYVDSSEPCATRMEVTASECDFENRQT
LEWGYGEGDSSSTCETALPETTTIKCDHVAWGSGEGIAIGILAGAGMTVS
LFFWVALWRYRKSRTVRLGQPALCKTVIAGICITCLSALALLGASEDLNC
ALGLWGYSLGFDLAFGAVAVKLWCSLSAAESSPKFTRVRLTTRKVLAMAG
VIIAADAVVLARWTATFGDTCDAQYEAVGGVGTSGVMAYVRRNSCISCSH
VLFWAWIGLKVVLVLLCCYVSLRGRKAQSSVSDSSSFMFRGIGMAVYNLA
MAGLLVGAVVWADADAQVRRTTEAVAIVLAGVGTLLSILAPKILRAKQEL
EGKALVGPSAVVTGPNGSRDAPFGVGAGDLFGDGEEGGPRTSTPSGVSSV
NGGGDG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017978	GPCR_3_C
IPR002455	GPCR3_GABA-B