prot_C-linearis_contig87.16310.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16310.1
Unique Nameprot_C-linearis_contig87.16310.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length565
Homology
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 3.470e-92
Identity = 151/197 (76.65%), Postives = 170/197 (86.29%), Query Frame = 0
Query:    1 MEPASYNSERQG-SGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAK 196
            MEP SYN+ERQG SGQG QW+FGTDKF+ ED+ARIQ+A         TA  WDQINSRPGGGGK+V YLAGHTV EN NKVFGFAGWDSSILHLS+DY+S+DGRFWMA ATAIVR+++ NGCGHEDVGN+H+KD+DKGEVL RVKKAAVTDA KRALRLFGTQLG  M DKEGLK+ E THKQNQ+ELKANQQR+A+
Sbjct:    1 MEPTSYNAERQGASGQGAQWIFGTDKFSDEDHARIQQALN-------TALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREAR 190          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A6H5JZ89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ89_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.940e-40
Identity = 79/99 (79.80%), Postives = 91/99 (91.92%), Query Frame = 0
Query:   98 QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAK 196
            +S+DGRFWMA ATAIVR+++ NGCGHEDVGN+H+KDRDKGEVL RVKKAAVTDA KRALRLFGTQLG  M+DKEGLK+ E THKQNQ+ELKANQQR+A+
Sbjct:    9 KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMTDKEGLKETEITHKQNQRELKANQQREAR 107          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A6H5K4D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.970e-39
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = 0
Query:    1 MEPASYNSERQG-SGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQS 99
            MEP SYN+ERQG SGQG QW+FGTDKF+ ED+ARIQ+A         TA  WDQINSRPGGGGK+V YLAGHTV EN NKVFGFAGWDSSILHLS+DY S
Sbjct:    1 MEPTSYNAERQGTSGQGAQWIFGTDKFSDEDHARIQEALN-------TALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYVS 93          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 106 bits (264), Expect = 1.010e-22
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 0
Query:   20 VFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDY--QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLK 174
            +FG + +T+E+  R+           +T    D  + RPG GG ++ YL      E  N+VFGF GW S I+ L++D+   +  G+ W A A+AI+R+ L +G  H+DVG    +D +KG  ++  KK AV+DA KR+LR+FG  LG  + DK+ LK
Sbjct:    8 LFGNESYTQEEIERLA-------IELSTPLPRDDQSERPGPGGTRLTYLESWKAIEIANRVFGFNGWSSRIVELTLDFCEVAPSGK-WRAGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A2P6NIG4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIG4_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.730e-22
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 0
Query:   20 VFGTDKFTKEDNARI-----QKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQ 184
             FG  ++T E+ + I     QK   N            ++  R G G + V YL      E  N++FG+ GW SS+++LS D+   +G+ +    +A+VRV L +G  HEDVG     +  KG  +++ KK A++DA KRALRLFG +LG S+ DKE +K  +   K NQ
Sbjct:   12 TFGELEYTNEEKSAIGNILEQKLGAN------------EVAFRTGAGSQSVGYLEAWRAIELANEIFGYDGWSSSVINLSQDFLEGEGQRFSCGISAVVRVQLKDGSFHEDVGYGTADNMKKGLAIEKAKKEAISDALKRALRLFGNRLGNSVYDKEHMKANQAQQKANQ 169          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A0A1UCM6_ENTIV (DNA repair and recombination protein RAD52, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UCM6_ENTIV)

HSP 1 Score: 106 bits (264), Expect = 3.080e-22
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 0
Query:   20 VFGTDKFTKEDNARI---QKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQ 182
            +FGT  FT  +  +    QK   NY            ++ RPG    ++ YL    V E +N +FGF GW S I +L+VDY   +   +    TA+VRV+L NG  HEDVG    +   KG  ++  KK AV+DA KRALRLFG  LG S+ D + ++  +  HKQ
Sbjct:    5 LFGTQSFTNPEQIQQILEQKVPVNY------------VSVRPGPSNMKLTYLESWRVVELSNALFGFDGWSSCITNLNVDYVDAEKGKYKVGVTAVVRVTLKNGSYHEDVGVGMAEMPRKGAAIELAKKEAVSDARKRALRLFGNYLGNSLYDTDYVRQLDTNHKQ 158          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A166WH72_9AGAM (Recombination protein Rad52 (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166WH72_9AGAM)

HSP 1 Score: 103 bits (258), Expect = 3.260e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 0
Query:   52 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQ--SDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKD-RDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDK 170
            + I+ RPG GG+++ Y  G  +    N+VFGF GW SSI++LS+D    +++ R W    +AIVRV+L +G  HED+G   L++ + KG  L + KK AVTDA KRALR FG  +G  + DK
Sbjct:   36 EYISQRPGPGGQKLTYAEGWKIINLANEVFGFNGWSSSIVNLSIDTTDFNEESRKWSVGVSAIVRVTLRDGTFHEDIGYGILENSKTKGPALDKCKKEAVTDALKRALRNFGNLMGNCLYDK 157          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: J5SM22_TRIAS (DNA strand annealing protein n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J5SM22_TRIAS)

HSP 1 Score: 107 bits (268), Expect = 1.300e-21
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 0
Query:   52 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKE 171
            + I+ RPGGGG +  Y+ G        KVFGF GW SSI+ LS D++ +  R W+ S TAIVR++L +GC HEDVG+ H ++  KG      KK AVTDATKRAL+ FG  LG+ + DKE
Sbjct:   75 EYISQRPGGGGSKFTYVEGW-------KVFGFNGWSSSIVKLSTDFEGE--RVWI-SVTAIVRITLQDGCWHEDVGHGHCENM-KGRAAAIEKKEAVTDATKRALKTFGNVLGLCIYDKE 183          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A137P4J8_CONC2 (Rad52/22 double-strand break repair protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P4J8_CONC2)

HSP 1 Score: 101 bits (252), Expect = 2.070e-21
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 0
Query:   54 INSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSD-DGRFWMASATAIVRVSLGNGCGHEDVG-NAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGL 173
            +++RPG GG ++ Y+ G  V E  N++F F GW S I+ +  DY  + DGR W      ++RVSL +G  HEDVG  +   +R KG  L++ +K A TDA KRALRLFG  LG  +  K+ L
Sbjct:   34 VSTRPGPGGSKLSYIEGWKVIEKANEIFNFDGWSSQIIKMETDYVDNIDGR-WSVGINIVIRVSLVSGTYHEDVGFGSATNERSKGAALEKARKEASTDALKRALRLFGNNLGNCIYSKKYL 154          
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: D8QED5_SCHCM (Rad52-like protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8QED5_SCHCM)

HSP 1 Score: 99.8 bits (247), Expect = 3.920e-21
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 0
Query:   52 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDY--QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDR-DKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDK 170
            + +++RPGGGG ++ Y AG  +    N+VFGF GW ++++ L+VD+  ++  GRF     T+I+RV+L +G  HED+G     +  +KG+ L + KK AVTD  KRALR FG  +G  + DK
Sbjct:    8 EYLSTRPGGGGSKLTYTAGWQIINLANEVFGFNGWSTNVISLTVDFCDETKSGRF-STGVTSILRVTLRDGAFHEDIGYGQADNMPNKGQALDKAKKEAVTDGMKRALRHFGNVVGNCLYDK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGZ9_ECTSI3.470e-9276.65DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
A0A6H5JZ89_9PHAE4.940e-4079.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D8_9PHAE6.970e-3974.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644DBF21.010e-2238.22hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2P6NIG4_9EUKA1.730e-2236.47Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0A1UCM6_ENTIV3.080e-2238.55DNA repair and recombination protein RAD52, putati... [more]
A0A166WH72_9AGAM3.260e-2245.08Recombination protein Rad52 (Fragment) n=1 Tax=Fib... [more]
J5SM22_TRIAS1.300e-2150.00DNA strand annealing protein n=1 Tax=Trichosporon ... [more]
A0A137P4J8_CONC22.070e-2143.44Rad52/22 double-strand break repair protein n=1 Ta... [more]
D8QED5_SCHCM3.920e-2141.80Rad52-like protein (Fragment) n=1 Tax=Schizophyllu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 173..209
NoneNo IPR availablePANTHERPTHR12132:SF1DNA REPAIR PROTEIN RAD52 HOMOLOGcoord: 52..384
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 27..205
IPR042525DNA repair protein Rad52/59/22 superfamilyGENE3D3.30.390.80coord: 50..180
e-value: 3.5E-35
score: 122.8
IPR041247Rad52 familyPFAMPF04098Rad52_Rad22coord: 53..184
e-value: 1.9E-29
score: 102.6
IPR007232DNA repair protein Rad52/59/22PANTHERPTHR12132DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59coord: 52..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:642061..646994 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16310.1mRNA_C-linearis_contig87.16310.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 642061..646994 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16310.1 ID=prot_C-linearis_contig87.16310.1|Name=mRNA_C-linearis_contig87.16310.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=565bp
MEPASYNSERQGSGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARF
WDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSD
DGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTD
ATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAKRQQQ
QQQQQQQQQSPPQAPPPPPPPPPQQQQQQQQQQQQQNQQHHHYPQQQQQQ
QQQQSPPQAPPPPPPPPPQQQQQQQQQQQQQQNQQHHHYPQRQQQQQQQQ
QQQQQQQQRARGPGAKPQTPQQRQQHQQSTPGSTIAAANDGGASSSRAIP
PKSPLAASPPAAAVAAIATGPRVILRESSPNKTLQSGGDASGGGGRGGGS
SGRELLAEMAARRNNSPAFDYTVADGDGYVGGEAAISAPAGPAAPELLPT
EGASATAAPAAVGGAGGTEERGEPGGGDSGYIGGGDGDEFGLSQDFELAT
LMEIDSAIHRHTTSGLSAGSGDGFPGGAAIGIGSGIGSGGGRFGGGGGQV
MPRRQQGYNNNNNNN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042525Rad52_Rad59_Rad22_sf
IPR041247Rad52_fam
IPR007232Rad52_Rad59_Rad22